RetrogeneDB ID: retro_ogar_2658

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873644.1:538744..539482(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002621
• Aliases: None
• Description: None

Sequence

>retro_ogar_2658
TCTGCACTGGATCTTCTTCGAGCTGGTCCTTTTGATGGGTTCCAGATTGCTACCACGCTGAAGGAAATTTTGAAAGGTCT
GGACTGTTTGCATTCAGAGAAGAAAATTCACCGAGACATAAAAGTTGCCAATGTCTTGCTCTGAGAACAAGGAGATGTTA
AACTTGCTGACTTCAGAATTGCTGGCCAGCTGACAGATACACAAATTAAAAGAAATACCTTCGTGGGAACTCCATTTGGA
TGGCTCCTGAAGTTATTCAACAGTCAGCTTCTGACTCAAAAGCTGACATTTGGTCACCGGGAATTACTGCTATTGAACTG
GCCAAGGGAGAGCCACCTAACTCTATATGAATCCAGTGCGAGTTCTGTTTCTTATTCCAAAAAACAACCCTCCAACTCTT
GTTGGAGACTTTACTAAGTCTTTTAAGGAGTTCATTGATGCTTGCCTGAACAAAGATCCCTCATTTTGTCCTATAGCTAA
AGAACTTCTGAAACACAAATTCATTGTGAAAAATTCAAAGAGGACTTCTTATCTGACTGAACTGATAGATTGATTAAAAG
ATGGAAGGCAGAAGGACACAGTGATGAGGATTCGGATTCTGAGGGCTCTGATTCGGAATCCACAAGTGAGGAGAATAATA
CTCACCCTGAGTGGAGCTTTACCGCTGTGCGGCAGAAGCCTGATGCAAAGAAACTAGAGAATGGCGCAGAACAAGATCTT
GCGCAAACCCTGAGCTGT

Alignment

ORF - retro_ogar_2658 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.8 %
• Parental protein coverage: 56.91 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  SALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK
          SALDLLRAGPFD.FQIAT.LKEILKGLD.LHSEKKIHRDIK.ANVLL.EQGDVKLADF..AGQLTDTQIK
Retrocopy SALDLLRAGPFDGFQIATTLKEILKGLDCLHSEKKIHRDIKVANVLL*EQGDVKLADFRIAGQLTDTQIK

Parental  RNTFVGTPF-WMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNS-DMHPMRVLFLIPKNNPPTLVGDF
          RNTFVGTPF.WMAPEVIQQSA.DSKADIWS.GITAIELAKGEPPNS..M.P.RVLFLIPKNNPPTLVGDF
Retrocopy RNTFVGTPF<WMAPEVIQQSASDSKADIWSPGITAIELAKGEPPNS<YMNPVRVLFLIPKNNPPTLVGDF

Parental  TKSFKEFIDACLNKDPSFRPTAKELLKHKFIVKNSKKTSYLTELID-RFKRWKAEGHSDDDSDSEGSDSE
          TKSFKEFIDACLNKDPSF.P.AKELLKHKFIVKNSK.TSYLTELID...KRWKAEGHSD.DSDSEGSDSE
Retrocopy TKSFKEFIDACLNKDPSFCPIAKELLKHKFIVKNSKRTSYLTELID<LIKRWKAEGHSDEDSDSEGSDSE

Parental  STSKENNTHPEWSFTTVRKKPDAKKLQNGARHISPGNHSC
          STS.ENNTHPEWSFT.VR.KPDAKKL.NGA........SC
Retrocopy STSEENNTHPEWSFTAVRQKPDAKKLENGAEQDLAQTLSC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2658 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018826	1 retrocopy	retro_cfam_1067,
Felis catus	ENSFCAG00000026530	1 retrocopy	retro_fcat_223,
Macropus eugenii	ENSMEUG00000013597	1 retrocopy	retro_meug_307,
Microcebus murinus	ENSMICG00000009064	1 retrocopy	retro_mmur_527,
Otolemur garnettii	ENSOGAG00000002621	1 retrocopy	retro_ogar_2658 ,