RetrogeneDB ID: | retro_mmur_63 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_106:203712..205050(-) | ||
| Located in intron of: | ENSMICG00000004000 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GPATCH4 | ||
| Ensembl ID: | ENSMICG00000013624 | ||
| Aliases: | None | ||
| Description: | G patch domain containing 4 [Source:HGNC Symbol;Acc:25982] |
Retrocopy-Parental alignment summary:
>retro_mmur_63
TTGAGTGTCACCCCAGAGGTCAAGAGTCATGGGATGAAGTTTGCTGAGGAGCAGCTGCTAAAGCATGGATGGACTCAAGG
CAAAGGCCTGGGCTGGAAGGAGAATGACATGACCCAGGCCCTCAGGGTGACACTGAAGCAGGACACTCATGGGATGGGAC
ATGACCCTGCCAAGGAGTTCACAAACCACTGGTTGAACGAGCTCTTCAACAAGACTGCAGCCAACTTGGTAGTGGAGACT
GGACAGGATGGAGTACAGATAAGGCGCCTTCTACGGAGACCACCTGTCGTAATCTTCCCAAGCCCAACTTGCTGTATCAG
AAGTTTGTGAAGATGGCTACCCTGACTTCAGATGGAGAGAAGCCAGACAAAAACATGGAAAGTTGCAGTGACGATGACAA
CCAGAGGCCCAACCCCCCAAAAATTCTGACGGATGAGATGCTGCTCCAAGCCTGTGAGGGGCCAATAGCACAGAAGGCTG
CCCGTTTTGGGATTACGATGAAGGCCAAGCTTGCTCGGCTGGAGGCCCAGGAGCAGGCCTTCCTGGCTCATCTCAAAGGC
CAAGACTCTCAGGCCTCTCAACCACAGTCAGAGAGCAAGCCCCCCAAAAAGAAGAAAAAGAAAAGGAAGCATAAAGAGGA
GGAAGAGGCTACAGCATCTGAAAGGAATGCAGATGAGAAGCACCCAGAACACACTGACCAGAGCACCAGGAAAAGCAAGA
AGAAGAAAAGGCAACATCAAGAACAAAAGGTCTCAGATAAGAAAGAGGGAACAACTGTAGGGAATGAGGAAGAAGAAGCT
GCAGGAACAAGTGAGCTTAGGGAATTGAAGAGCAGAGAGCAAACCGATCAGTCCCCCAGGAAAAAGAAGAGAAAGAAGCA
GCACCATGAAGAGGAGAAGATGGGAGTCTTGGATGAAGGAGGAAGAGGTAAGGAGGCTACAGGTGCTGTCAGGACAGAGG
AGGTAGAGAGCACAGTGTACACCGACCCGTGCAGCAGAAGCAAGAAGAAACGGTACCATGAGAAGGATTTGAACTTAGAG
GATGAAGAAGTTGGGGAAACTGTTTTGGACAGTGGGACCAGGGACACAGAGAACAGAGCATGCAGTGATAGAGGAAGGAG
AAGCAAGAAGAAAACACGGCGACATCGAGAGGAGGAGGAAGTCGTCAATATAAAGGATGAAAGAGATGAGGGGGATGGCA
GGACTAGGAAAGCAGAGAGCAGAGCACACACTGGCTCAAGCAGCAGAGGTAAGAAGAGGAGGAAACGGCAGTCAGAGGAA
GAAAGCTGGAGTTGGCAATGACCAGAGAACCAAAAAGAAGAAACAGAGGAAGGGAGAC
ORF - retro_mmur_63 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.86 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | MSVTPEVKSHGMKFAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFN |
| .SVTPEVKSHGMKFAEEQLLKHGWTQGKGLG.KEN..TQALRVTLKQDTHG.GHDPAKEFTNHW.NELFN | |
| Retrocopy | LSVTPEVKSHGMKFAEEQLLKHGWTQGKGLGWKENDMTQALRVTLKQDTHGMGHDPAKEFTNHWLNELFN |
| Parental | KTAANLVVETGQDGVQIRRL-STETTCRNPPKPNLLYQKFVKTATLTSDGEKPDKDMESCSDDDNQRPNP |
| KTAANLVVETGQDGVQIRRL.STETTCRN.PKPNLLYQKFVK.ATLTSDGEKPDK.MESCSDDDNQRPNP | |
| Retrocopy | KTAANLVVETGQDGVQIRRL<STETTCRNLPKPNLLYQKFVKMATLTSDGEKPDKNMESCSDDDNQRPNP |
| Parental | PKILTDEMLLQACEGRTAHKAARLGITMKAKLARLEAQEQAFLAHLKGQDSQASQPQSESKPPKKKKKKR |
| PKILTDEMLLQACEG..A.KAAR.GITMKAKLARLEAQEQAFLAHLKGQDSQASQPQSESKPP....... | |
| Retrocopy | PKILTDEMLLQACEGPIAQKAARFGITMKAKLARLEAQEQAFLAHLKGQDSQASQPQSESKPPXXXXXXX |
| Parental | KHKEEEEATASERNADEKHPEHTDQSTRKSKKKKRQHQEQMVSDKREGTTVGNEEEEATGTSELRELKSR |
| ........TASERNADEKHPEHTDQSTRKSKKKKRQHQEQ.VSDK.EGTTVGNEEEEA.GTSELRELKSR | |
| Retrocopy | XXXXXXXXTASERNADEKHPEHTDQSTRKSKKKKRQHQEQKVSDKKEGTTVGNEEEEAAGTSELRELKSR |
| Parental | EQTDQSPRKRKRKKKQHHGEEKTGVLDEGGRGK-ATGAVRTEAVESTVYTDPCSRSKKKRHCEKDLNLED |
| EQTDQSPRK.KR.KKQHH.EEK.GVLDEGGRGK.ATGAVRTE.VESTVYTDPCSRSKKKR..EKDLNLED | |
| Retrocopy | EQTDQSPRKKKR-KKQHHEEEKMGVLDEGGRGKEATGAVRTEEVESTVYTDPCSRSKKKRYHEKDLNLED |
| Parental | EEVGETVLDSGTRDTENRACSDGGRRSKKKTRRHREEEEVVNVGDERDEGDGRTRKAESSAHTGSSSRGK |
| EEVGETVLDSGTRDTENRACSD.GRRSKKKTRRHREEEEVVN..DERDEGDGRTRKAES.AHTGSSSRGK | |
| Retrocopy | EEVGETVLDSGTRDTENRACSDRGRRSKKKTRRHREEEEVVNIKDERDEGDGRTRKAESRAHTGSSSRGK |
| Parental | KRRKRQ-RKKAGVGTDQRTKKK-KQKKGD |
| KRRKRQ...K..........KK.KQ.KGD | |
| Retrocopy | KRRKRQ>QRKKAGVGNDQRTKKKKQRKGD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_63 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_63 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000013624 | 2 retrocopies |
retro_mmur_1516, retro_mmur_63 ,
|
| Otolemur garnettii | ENSOGAG00000006698 | 1 retrocopy | |
| Rattus norvegicus | ENSRNOG00000018969 | 1 retrocopy |