RetrogeneDB ID: retro_ogar_2053

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873585.1:1964426..1965368(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000006698
• Aliases: None
• Description: None

Sequence

>retro_ogar_2053
GAGAGTCATGGGATGAAGTTTGCTGAGCAGCAGCTCCTGAATCGTGGATGGACTCGAGGGAAAGCCCTGGGCAGGAAGGA
AAATAGCATCACCCTGGCCCTGAGGGTGACACTGAAGCAGGACACTTGTGGGGTGGGACACGGTCCTGCCAAGGAGTTCC
ACTGGTGGAATGAGCTTTTCAACCAGACTGCAGCCCACCTGGTGGTGGAAACCGGACAGGATGGTGTCCAGATAAGGCGT
CTTTCTAAGGAGACCACCTGTCAAAATTGTCCCAAGACCAACTTGCTGTATCAGAAGCTTGTGAAGACAGGCACCCTGAC
TTCAGGGAGGGAAGCCAGACAGAGCCTGAGAGAGCTGCAGTGACGACGACAACCAGAGGCCCCCAGAGATTCTGATTGAC
AAGATGCTGCCCCGAGCCTGTGAGGGGTGAACCGCACACGGGGCTGCCGGCCTGGGGATCACGATGAAGGCCAAGCTCGC
TCGGCTGGAGGCCCGGGAGCTGGTCTTCCTGGCTCATCTCAAAGGCCTCTCAGGCCTCTCAACCACAGTCAGAGAGCAAG
GCCCCCAAATAGAAGAAATAGAAAAGGAAGCAGAAGGAGGGGGAAGAGGCTGTAGCAACTGAAGGGAACGTGGATGAGAA
GTGGGCAGAGCACACTGAGCAGGGCGTCAGGAAAAGCAAGAAGAGAAGACACCGCCTCCCAGGCAAGGTCTCAGATGAGT
GGGGACAGCTGTAGGGAGAGGAGGAAGAGGCTGCAGGAACAGGTGGGCTGAGGGAACTGAAGAGCAGAGAGCCAACGATC
GGTCCCCAGGCAAAGGAAGAGAAAGAAGGGGCAGCACCGTGAAGGAAGGAAGATGGGGGTCTCGGATGAAGGAGGAAAAA
GTAAGGAGGTGACCGGTGCTATCAGGACGCAGGAGGGAGAGAACACGGTGCACACTGACCCG

Alignment

ORF - retro_ogar_2053 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.99 %
• Parental protein coverage: 74.88 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  KSRGMKFAEQQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNQTAANLV
          .S.GMKFAEQQLL..GWT.GK.LGRKEN.IT.ALRVTLKQDT.GVGH.PAKEF..HWWNELFNQTAA.LV
Retrocopy ESHGMKFAEQQLLNRGWTRGKALGRKENSITLALRVTLKQDTCGVGHGPAKEF--HWWNELFNQTAAHLV

Parental  VETGQDGVQIRRLSKETTCQNHPKPNLLYQKFVKTATLTSEGEKPDRDL-ESCSDDDNQRPKPPKILTDE
          VETGQDGVQIRRLSKETTCQN.PK.NLLYQK.VKT.TLTS.G......L.ESCSDDDNQR..PP.IL.D.
Retrocopy VETGQDGVQIRRLSKETTCQNCPKTNLLYQKLVKTGTLTS-GREARQSL>ESCSDDDNQR--PPEILIDK

Parental  MLLQACEGRTAHKAARLGITMKAKLARLEAQEQAFLAHLKGKASQAS-QPQSESKPPKKKKKKRKQKEEE
          ML..ACEG.TAH.AA.LGITMKAKLARLEA.E..FLAHLKG.......Q..S....PK.KK.KRKQKE.E
Retrocopy MLPRACEG*TAHGAAGLGITMKAKLARLEARELVFLAHLKGLSGLST>QSESKA--PK*KK*KRKQKEGE

Parental  EATTTERNADEKCPEHTIQSIRKSKKKKRHHQEEKVSYPTVGTAVGDKEEEATGTGGLREF-SKEPT-DQ
          EA..TE.N.DEK..EHT.Q..RKS.KK.RH....KVS....G...G..E.EA.GTGGLRE..S.EPT.D.
Retrocopy EAVATEGNVDEKWAEHTEQGVRKS-KKRRHRLPGKVS-DEWGQL*GEEE-EAAGTGGLRELKSREPT<DR

Parental  S-SRKRKRKKKHRHEEKKMGVLDERGRGKEATSAVKI-EGENTAHTDP
          S..R.RKRKK....E..KMGV.DE.G..KE.T.A....EGENT.HTDP
Retrocopy S<PRQRKRKKGQHREGRKMGVSDEGGKSKEVTGAIRTQEGENTVHTDP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2053 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013624	2 retrocopies	retro_mmur_1516, retro_mmur_63,
Otolemur garnettii	ENSOGAG00000006698	1 retrocopy	retro_ogar_2053 ,
Rattus norvegicus	ENSRNOG00000018969	1 retrocopy	retro_rnor_2299,