RetrogeneDB ID: retro_mmur_662

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4502:144355..145503(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GNL3L
• Ensembl ID: ENSMICG00000010144
• Aliases: None
• Description: guanine nucleotide binding protein-like 3 (nucleolar)-like [Source:HGNC Symbol;Acc:25553]

Sequence

>retro_mmur_662
CTTAGACACAAAAATAAAAAGCCAGGTAAAGGTGCCAAAGGCTGCAAGAAGCCTGCAAAGCAAAATGGGAAGAAAGCGGC
CTCCAAAGTGCCCTTGGCTTCTCAGTTTGTTCACTCCAATGATCACCCTAATCGAGAGGCTGAATTAAAGAAGAGGGTTG
AGGAGATGAGGGAGAAGCAGCAAGCTGCCCGGGAGCAAGAGAGACAAAGACGCAGGACCATGGAGACTTACTGTCAGGAT
GTCCTGAGACGCCAGGAGGAGTTGGAGCGCAAGGAGGAAGTTTTGCAGGAATTAAATATGTTTTCTCAGCTGGATGATGA
GGCCACAAGGAAGGCTTATTACAAGGAGTTCTGTAATGTGGTCGAATACTCTGATGTGATTCTGGAAGTCCTGGATGCCA
GAGACCCATTGGGCTGCCGCTGCTTCCAAATGGAGGAGGCTGTCCTGTGGGCAGAGGGCAACAAGAAGCTGGTCCTAGTC
TTGAACAAGATTGACCTGGTCTGCAAGGAGGTCGTGGAGAAGTGGCTGGATGACCTTCAGAATGAGCTGCCAACCGTGGC
TTTCAAGGCCAGCACCAGCATCAAGTCAAAAACCTGAATCGTTGCAGTGTGCCAGTGGATCAGGCCTCTGAGTCGCTGCT
GAAAAGCAAAGCCTGCTTTGGAGCTGAAAATCTCAGGAGGGTTCTGGGGAACTATCGCCGCCTTGGTGAAGTGCACACCC
ATATCCGTGTGGGTGTTGTGGGCCTTCCCAATGTTGGGAAGAGCAGTCTGATCAATAGCCTGAAGCGCAGCCGTGCGTGC
AGTGTGGGAGCCGTTCCTGGCGTCACCAGATTCATGCAGGAGGTCTACCTGGACAAGTTCATCAGGCTTCTGGATGCTCC
AGGCATTGTCCCAGGCCCCAACTCAGAGGTGGGCACTATCCTGCGCAACTGTGTCCATGTGCAGAAGCTGGCAGACCCTG
TAACCCCAGTGGAGACCATCCTGCGGGGGCGCTGCAACCTGGAGGAGATTTCCAACTATTATGGCGTCTCTGGTTTCCAG
ACCACCGAGCACTTTCTGATTGCAGTGGCCTAACGCTTGGGGAAGAAGAAGAAGGGAGGCATATACAGTCAGGAGCAGGC
AGCCAAAACTGTCCTGGCTGACTGGGTG

Alignment

ORF - retro_mmur_662 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.07 %
• Parental protein coverage: 67.01 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LRHKNKKPGKGSKGCKKVSWPYPQPAKQNGKKAPSKVPMASQFVHSNDHPNREAELKKKRVEEMREKQQA
          LRHKNKKPGKG.KGCKK...P..Q..K....K.P.....ASQFVHSNDHPNREAEL.KKRVEEMREKQQA
Retrocopy LRHKNKKPGKGAKGCKK---PAKQNGKKAASKVP----LASQFVHSNDHPNREAEL-KKRVEEMREKQQA

Parental  AREQERQRRRTMESYCQDVLRRQEEFERKEEVLQELNMFPQLDDEATRKAYYKEFRKVVEYSDVILEVLD
          AREQERQRRRTME.YCQDVLRRQEE.ERKEEVLQELNMF.QLDDEATRKAYYKEF..VVEYSDVILEVLD
Retrocopy AREQERQRRRTMETYCQDVLRRQEELERKEEVLQELNMFSQLDDEATRKAYYKEFCNVVEYSDVILEVLD

Parental  ARDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVPKEVVEKWLDYLQNELPTVAFKAST-QHQVKNLNR
          ARDPLGCRCFQMEE.VL.AEGNKKLVLVLNKIDLV.KEVVEKWLD.LQNELPTVAFKAST.QHQVKNLNR
Retrocopy ARDPLGCRCFQMEEAVLWAEGNKKLVLVLNKIDLVCKEVVEKWLDDLQNELPTVAFKAST<QHQVKNLNR

Parental  CSVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEVHTHIRVGVVGLPNVGKSSLINSLKRSRACSVGA
          CSVPVDQASESLLKSKACFGAENL.RVLGNY.RLGEVHTHIRVGVVGLPNVGKSSLINSLKRSRACSVGA
Retrocopy CSVPVDQASESLLKSKACFGAENLRRVLGNYRRLGEVHTHIRVGVVGLPNVGKSSLINSLKRSRACSVGA

Parental  VPGVTKFMQEVYLDKFIRLLDAPGIVPGPNSEVGTILRNCVHVQKLADPVTPVETILQ-RCNLEEISNYY
          VPGVT.FMQEVYLDKFIRLLDAPGIVPGPNSEVGTILRNCVHVQKLADPVTPVETIL..RCNLEEISNYY
Retrocopy VPGVTRFMQEVYLDKFIRLLDAPGIVPGPNSEVGTILRNCVHVQKLADPVTPVETILRGRCNLEEISNYY

Parental  GVSGFQTTEHFLIAVAQRLGKKKKGGIYSQEQAAKTVLADWV
          GVSGFQTTEHFLIAVA.RLGKKKKGGIYSQEQAAKTVLADWV
Retrocopy GVSGFQTTEHFLIAVA*RLGKKKKGGIYSQEQAAKTVLADWV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_662 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_662 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000252	2 retrocopies	retro_cjac_1591, retro_cjac_1853,
Homo sapiens	ENSG00000130119	1 retrocopy	retro_hsap_3327,
Gorilla gorilla	ENSGGOG00000007550	1 retrocopy	retro_ggor_1296,
Microcebus murinus	ENSMICG00000010144	1 retrocopy	retro_mmur_662 ,
Macaca mulatta	ENSMMUG00000008231	1 retrocopy	retro_mmul_2084,
Nomascus leucogenys	ENSNLEG00000016233	1 retrocopy	retro_nleu_1672,
Oryzias latipes	ENSORLG00000014117	1 retrocopy	retro_olat_29,
Pongo abelii	ENSPPYG00000020383	1 retrocopy	retro_pabe_2742,