RetrogeneDB ID: retro_mmur_738

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_524:279838..280180(+)
• Located in intron of: ENSMICG00000005210

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SIKE1
• Ensembl ID: ENSMICG00000015446
• Aliases: None
• Description: suppressor of IKBKE 1 [Source:HGNC Symbol;Acc:26119]

Sequence

>retro_mmur_738
GACGCAGCCTCCAAGTCGCTAGTGGATCAGTCTGAGGCCCTGCACCAGCGGGTGGCAGCTACGTGGGAGGCGGGCACTGT
GCTTCCAGACCAGTATCAAGAAGATGCATCTGATATGAAGGACATGTCCAAATACAAACCTCACATTCTGCAGTCCCAAG
AGAACACACAGATTAGAGACTTGTAGCAGGAAAACAGAGAGCCGTGGGTTTCCTTGGAGGAACACCAGGGTGCACTGGAA
CTCATCAAGAGCAAGTACCAGAAACAGATGTTACAGTTAATGGTTGCTAAAAGAGCCATGGATGCTGAACCAGCCCTGAA
AGCTCACCAGTCTCATGCTGCA

Alignment

ORF - retro_mmur_738 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.2 %
• Parental protein coverage: 55.92 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DAAAESLVDQSAALHRRVAAMREAGTALPDQVRQRYQEDASDMKDMSKYKPHILLSQENTQIRDLQQENR
          DAA..SLVDQS.ALH.RVAA..EAGT.LPDQ....YQEDASDMKDMSKYKPHIL.SQENTQIRDL.QENR
Retrocopy DAASKSLVDQSEALHQRVAATWEAGTVLPDQ----YQEDASDMKDMSKYKPHILQSQENTQIRDL*QENR

Parental  ELWVSLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPVLKAHQSHSA
          E.WVSLEEHQ.ALELI.SKY.KQMLQLMVAK.A.DAEP.LKAHQSH.A
Retrocopy EPWVSLEEHQGALELIKSKYQKQMLQLMVAKRAMDAEPALKAHQSHAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_738 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_738 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012958	1 retrocopy	retro_chof_48,
Echinops telfairi	ENSETEG00000007805	1 retrocopy	retro_etel_615,
Loxodonta africana	ENSLAFG00000010502	1 retrocopy	retro_lafr_565,
Microcebus murinus	ENSMICG00000015446	1 retrocopy	retro_mmur_738 ,
Otolemur garnettii	ENSOGAG00000005952	2 retrocopies	retro_ogar_1794, retro_ogar_2028,
Ictidomys tridecemlineatus	ENSSTOG00000001684	1 retrocopy	retro_itri_1447,
Tupaia belangeri	ENSTBEG00000007772	1 retrocopy	retro_tbel_2455,