RetrogeneDB ID: retro_mmur_797

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_94:145332..146934(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DNMT3A
• Ensembl ID: ENSMICG00000004108
• Aliases: None
• Description: DNA (cytosine-5-)-methyltransferase 3 alpha [Source:HGNC Symbol;Acc:2978]

Sequence

>retro_mmur_797
GTGGCCAGCAGCCGCTCCGGGAAGCTGTTCCCAGCGTGCCATGACAGCGACGAGAGTGACACTGCCAAGGCCATGGAGGT
GCAGAACAAGCAAATGATTGAATGGGCCCTCGGGGGGTTCTAGCCTTCCAGCCCCAAGGGCCTGGAGCCACCAGAAGAGG
AGAAGAATCTTTACACAGACATGTGAGTTGAACCTGAGGCAGTTGCCTATGCACCACCCCCACCAGCCAAAAAGCCCCGA
AAGAGCACAACAGAGAAGCTCAAGGTCAAGGAGATTATCGATGAACGCACAAGAGAGCGGCTGGTGTACAAGGTGCGGCA
GAAGTGCAGGAATATCGAAGATATTTGCATTTCTTGTGGGAGCCTCAACGTCACCCTGGAACACCCTCTCTTCACTGGAG
GAATGTGCCAAAACTGCAAGAACTGCTTCCTGGAGTGTCCATACCAGTATGACGACGATGGCTATCAGTCCTACTGCACC
ATCTGCTGTGGGGGGCGTGAGGTGCTCATGTGCGGGAACAACAACTGCTGCAGGTGCTTTTGCGTGGAGTGTGTGGACCT
CTTGGTGGGGCCGGGGGCTGCCCAGGCGGCCATTAAGGAAGACCCCTGGAATTGCTACATGTGTGGGCACAAGGGTACCT
ATGGGCTGCTGCGGCGGCGGGACGACTGGCCCTCTAGGCTCCAGATGTTCTTCGCCAATAACCACGACCAGGAATTTGAC
CCTGCGAAGGTTTATCCACCTGTCCCAGCCGAGAAGAGGAAGCCTATCCGGGTGCTGTCTCTCTTTGACGGAATTGCTAC
AGGGGTCCTGGTGCTGAAGGACCTGGGCATCCAGGTGGACCGCTACATCGCCTCGGAGGTGTGCGAGGACTCCATCACGG
TGGGCATGGTGCTGCACCAGGGGAAGATCATGTACGTCGGGGTCGTCCGCAGCGTCACACATAAGCATATCCAGGAGTGG
GGCCCCTTCGATCTGGTGATTGGGGGCAGTCCCTGCAACGATCTCTCCATCGTCAACCCTGCCCGCAAGGGACTCTACGA
GGGCACTGGCCGGCTCTTCTTTGAGTTCTACCATCTCCTGCATGATGCGCGGCCCAAGGAGGGAGATGACCGCCCCTTCT
TCTGGCTCTTTGAGAATGTGGTGGCCATGGGCGTTAGTGACAAGAGGGACATCTCGCGATTTCTCGAGTCCAACCCTGTG
ATGATTGATGCCAAAGAAGTGTCAGCTGCACACAGGGCCCGCTACTTTTGGGGTAACCTTCCCAGTATGAACAGGCCATT
GGCGTCCACTGTGAATAATAAGCTGGAGCTGCAGGAGTGTCTGGAGCACGGCAGGATAGCCAAGTTCAGCAAAGTAAGGA
CCATTACTACTAGGTCGAACTCCATAAAGCAGGGCAAAGACCAGCATATTCCCGTCTTCATGAACGAGAAAGAGGACATC
TTATGGTGCACTGAAATGGAAAGGGTGTTTGGCTTCCCCGTCCACTATACCGACGTCTCCAACATGAGCCGCTTGGCCAG
GCAGAGACTTCTAGGCCGGTCGTGGAGCGTGCCAGTCATCCGCCACCTCTTCGCTCCGCTGAAGGAATATTTTGCTTGTG
TG

Alignment

ORF - retro_mmur_797 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.72 %
• Parental protein coverage: 58.86 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VASSRSGKLFPACHDSDESDTAKAVEVQNKQMIEWALGGFQPSGPKGLEPPEEEKNPYKEVYTDMWVEPE
          VASSRSGKLFPACHDSDESDTAKA.EVQNKQMIEWALGGF.PS.PKGLEPPEEEKN.....YTDM.VEPE
Retrocopy VASSRSGKLFPACHDSDESDTAKAMEVQNKQMIEWALGGF*PSSPKGLEPPEEEKN----LYTDM*VEPE

Parental  AAAYAPPPPAKKPRKSTTEKPKVKEIIDERTRERLVYEVRQKCRNIEDICISCGSLNVTLEHPLFIGGMC
          A.AYAPPPPAKKPRKSTTEK.KVKEIIDERTRERLVY.VRQKCRNIEDICISCGSLNVTLEHPLF.GGMC
Retrocopy AVAYAPPPPAKKPRKSTTEKLKVKEIIDERTRERLVYKVRQKCRNIEDICISCGSLNVTLEHPLFTGGMC

Parental  QNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCY
          QNCKNCFLEC.YQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCY
Retrocopy QNCKNCFLECPYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCY

Parental  MCGHKGTYGLLRRRDDWPSRLQMFFANNHDQEFDPPKVYPPVPAEKRKPIRVLSLFDGIATGLLVLKDLG
          MCGHKGTYGLLRRRDDWPSRLQMFFANNHDQEFDP.KVYPPVPAEKRKPIRVLSLFDGIATG.LVLKDLG
Retrocopy MCGHKGTYGLLRRRDDWPSRLQMFFANNHDQEFDPAKVYPPVPAEKRKPIRVLSLFDGIATGVLVLKDLG

Parental  IQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLY
          IQVDRYIASEVCEDSITVGMV.HQGKIMYVG.VRSVT.KHIQEWGPFDLVIGGSPCNDLSIVNPARKGLY
Retrocopy IQVDRYIASEVCEDSITVGMVLHQGKIMYVGVVRSVTHKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLY

Parental  EGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYF
          EGTGRLFFEFY.LLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYF
Retrocopy EGTGRLFFEFYHLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFLESNPVMIDAKEVSAAHRARYF

Parental  WGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQHFPVFMNEKEDILWCTEM
          WGNLP.MNRPLASTVN.KLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQH.PVFMNEKEDILWCTEM
Retrocopy WGNLPSMNRPLASTVNNKLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQHIPVFMNEKEDILWCTEM

Parental  ERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV
          ERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV
Retrocopy ERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFACV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_797 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_797 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000008172	2 retrocopies	retro_cjac_4163, retro_cjac_899,
Microcebus murinus	ENSMICG00000004108	2 retrocopies	retro_mmur_1086, retro_mmur_797 ,
Monodelphis domestica	ENSMODG00000015850	1 retrocopy	retro_mdom_859,
Oryctolagus cuniculus	ENSOCUG00000024688	1 retrocopy	retro_ocun_564,