RetrogeneDB ID: retro_mmur_850

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_11018:6837..7567(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AGK
• Ensembl ID: ENSMICG00000002561
• Aliases: None
• Description: acylglycerol kinase [Source:HGNC Symbol;Acc:21869]

Sequence

>retro_mmur_850
CATATTACAGATGCTGCACTTGCCATTGGGAAAGGAGAGGCTGTTCCACTTGATGTCTCCAGATCAAGGGTGAAAAGGAA
CAACCTGTGTTTGCAATGACTGGCCTTCGATGGGATCCTTCAGAGACGCTGGCGTCAAAGTCAGCAATTACTGGCATCCT
GGGCCTCTAAAAACCAAAGCAGCCCACTTTTTCAGCACTCTTAAGGAGTGGCCTCAGATTCATCAAGCCTCTATCTCGTA
CACGGGACCTACAGAGAGATCTCCCAGTGAACCAGAAGAGACCTCTCCCCGACCTTCCTTGTATAGGAGAATATTATGAA
GGCTGGCAAAACCACAGGATGCCCCCTCTCAAGAGGTGAGCCCAGAGGTCTGGAAAGAAGTGCAGCTGTCAACTATTGAA
CTGTCCATCGCAACACGGAATGGTCAGCTTGATCTGACAAGTAAAGAAGACTTTATGAACACTTGCATTGAACCCGACGC
TGTCAGCAAAGGAGACTTTATAACTATAGGAAGTAAAAAGGTGAGAGACCCCAAGCTGCATGCCCAGGGCACCACGTGTC
TCCAGGCCAGCCAGTGTGCCTTGCTTCTGCCTGAAGGAACAGGGGGCTCTTTCAGCATTGACAGTGAGGAGTATGAAGCG
ATGCCTGTGTAGGTAGAGCTGCTCCCCAGAAAGCTGCAGTTCTTCTGTGACCCTAGGAAGAGGGAGCGGGGGCTGCAGAG
CACAGCCCAG

Alignment

ORF - retro_mmur_850 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.6 %
• Parental protein coverage: 58.91 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  HITDAALAIVKGETVPLDV-LQIKGEKEQPVFAMTGLRW-GSFRDAGVRVSNYWYLGPLKTKAAHFFSTL
          HITDAALAI.KGE.VPLDV.LQIKGEKEQPVFAMTGLRW.GSFRDAGV.VSNYW..GPLKTKAAHFFSTL
Retrocopy HITDAALAIGKGEAVPLDV<LQIKGEKEQPVFAMTGLRW<GSFRDAGVKVSNYWHPGPLKTKAAHFFSTL

Parental  KEWPQTHQASISYTGPTERSPSEPEETSPRPSLYRRILRRLASFWAQPQDAPSQEVSPEVWKEVQLSTIE
          KEWPQ.HQASISYTGPTERSPSEPEETSPRPSLYRRIL.RL....A.PQDAPSQEVSPEVWKEVQLSTIE
Retrocopy KEWPQIHQASISYTGPTERSPSEPEETSPRPSLYRRIL*RL----AKPQDAPSQEVSPEVWKEVQLSTIE

Parental  LSITTRNSQLDLTSKEDFMNICIEPDAVSKGDFITIGSKKVRDPKLHAEGTTCLQASQCALLLPEGTGGS
          LSI.TRN.QLDLTSKEDFMN.CIEPDAVSKGDFITIGSKKVRDPKLHA.GTTCLQASQCALLLPEGTGGS
Retrocopy LSIATRNGQLDLTSKEDFMNTCIEPDAVSKGDFITIGSKKVRDPKLHAQGTTCLQASQCALLLPEGTGGS

Parental  FSIDSEEYEAMPVEVKLLPRKLQFFCDPRKREQGLQSTAQ
          FSIDSEEYEAMPV.V.LLPRKLQFFCDPRKRE.GLQSTAQ
Retrocopy FSIDSEEYEAMPV*VELLPRKLQFFCDPRKRERGLQSTAQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_850 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_850 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000013589	1 retrocopy	retro_cjac_3228,
Gorilla gorilla	ENSGGOG00000008821	1 retrocopy	retro_ggor_3061,
Loxodonta africana	ENSLAFG00000002479	1 retrocopy	retro_lafr_403,
Microcebus murinus	ENSMICG00000002561	1 retrocopy	retro_mmur_850 ,
Macaca mulatta	ENSMMUG00000021017	1 retrocopy	retro_mmul_2637,
Mus musculus	ENSMUSG00000029916	1 retrocopy	retro_mmus_1130,
Nomascus leucogenys	ENSNLEG00000002291	1 retrocopy	retro_nleu_2349,
Pongo abelii	ENSPPYG00000018064	1 retrocopy	retro_pabe_3812,
Pan troglodytes	ENSPTRG00000019775	2 retrocopies	retro_ptro_3269, retro_ptro_3311,