RetrogeneDB ID: retro_mmur_854

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_111386:172..1450(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATP6V1B2
• Ensembl ID: ENSMICG00000001791
• Aliases: None
• Description: ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 [Source:HGNC Symbol;Acc:854]

Sequence

>retro_mmur_854
GTTCTAGAAGTTAGTGGTTCCAAAGCAGTGGTTCAGGTATTTGAAGGGACTTCAGGTATAGATGCCAAGAAAACGTCCTG
TGAGTTTACTGGGGATATTCTCCGAACACCAGTGTCTGAGGATATGCTTGGTCGGGTATTCAATGGATCAGGAAAACCCA
TTGACAAAGGTCCTGTTGTACTGGCTGAAGACTTTCTTGATATTATGGGTCAGCCCATCAATCCTCAGTGTCGAATCTAC
CCAGAGGAAATGATTCAGACCGGCATTTCAGCTATAGATGGCATGAACAGTATTGCTAGAGGGCAGAAGATTCCTATATT
CTCTGCTGCTGGGTTACCACACAATGAGATTGCAGCTCAGATCTGTCGCCAGGCTGGTTTGGTAAAGAAATCCAAAGATG
TAGTGGACTATAGTGAGGAAAATTTTGCAATTGTATTTGCTGCTATGGGTGTAAATATGGAAACTGCCCGGTTCTTCAAA
TCTGACTTTGAAGAAAATGGCTCAATGGACAATGTCTGCCTCTTTTTGAACTTGGCTAATGACCCAACCATTGAGCGAAT
CATCACTCCTCGCCTGGCTCTAACCATAGCTGAATTTCTGGCATACCAGTGTGAGAAACATGTATTGGTTATCCTAACAG
ACATGAGTTCTTATGCTGAAGCACTTCGAGAGGTCTCAGCAGCCAGGGAGGAGGTGCCTGGTAGACGAGGCTTCCCAGGT
TACATGTACACAGATTTAGCCACGATATATGAGCGCGCTGGGTGAGTGGAAGGTAGAAATGGCTCGATTACTCAGATCCC
TATTCTCACCATGCCTAACGACGATATCACTCACCCCATCCCTGACCTGACTGGGTATATTACAGAAGGGCAGATCTGTG
TGGACAGACAGCTGCACAACCGACAGATTTACCCTCCTATTAATGTGCTGCCCTCACTATCACGATTAATGAAGTCTGCT
ATTGGAGAAGGTATGACCAGAAAGGATCATGCCGACGTCTCCAACCAGCTGTATGCTTGCTATGCTATTGGGAAGGATGT
ACAAGCCATGAAAGCTGTAGTGGGAGAAGAAGCTCTTACCTCAGATGATCTTCTTTACTTGGAATTTCTGCAAAAGTTTG
AGAGGAACTTTATTGCTCAGGGTCCTTATGAAAATCGCACTGTGTATGAGACTTTGGACATTGGCTGGCAGCTGCTCCGA
ATCTTCCCCAAAGAAATGCTGAAGAGAATCCCTCAGAGCACCCTGAGCGAGTTCTACCCTCGAGACTCTGCCAAGCAT

Alignment

ORF - retro_mmur_854 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.06 %
• Parental protein coverage: 83.37 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVLAEDFLDIMG
          VLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVLAEDFLDIMG
Retrocopy VLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVLAEDFLDIMG

Parental  QPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDYCEE
          QPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDY.EE
Retrocopy QPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDYSEE

Parental  NFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLV
          NFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALT.AEFLAYQCEKHVLV
Retrocopy NFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTIAEFLAYQCEKHVLV

Parental  ILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPI
          ILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAG.VEGRNGSITQIPILTMPNDDITHPI
Retrocopy ILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAG*VEGRNGSITQIPILTMPNDDITHPI

Parental  PDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM
          PDLTGYITEGQI.VDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM
Retrocopy PDLTGYITEGQICVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAM

Parental  KAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSEFYP
          KAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSEFYP
Retrocopy KAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSEFYP

Parental  RDSAKH
          RDSAKH
Retrocopy RDSAKH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_854 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_854 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003668	1 retrocopy	retro_chof_2287,
Homo sapiens	ENSG00000147416	1 retrocopy	retro_hsap_4308,
Gorilla gorilla	ENSGGOG00000003888	1 retrocopy	retro_ggor_2879,
Microcebus murinus	ENSMICG00000001791	1 retrocopy	retro_mmur_854 ,
Nomascus leucogenys	ENSNLEG00000000794	1 retrocopy	retro_nleu_1460,
Pan troglodytes	ENSPTRG00000020040	1 retrocopy	retro_ptro_2917,
Tarsius syrichta	ENSTSYG00000010477	1 retrocopy	retro_tsyr_2096,
Tursiops truncatus	ENSTTRG00000013650	1 retrocopy	retro_ttru_1845,