RetrogeneDB ID: | retro_tsyr_2096 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_89386:11493..12320(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1B2 | ||
Ensembl ID: | ENSTSYG00000010477 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 [Source:HGNC Symbol;Acc:854] |
Percent Identity: | 92.78 % |
Parental protein coverage: | 54.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGK |
YAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKT.CEFTGDILR.PVSEDMLGRV.NGSGK | |
Retrocopy | YAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTPCEFTGDILRIPVSEDMLGRVVNGSGK |
Parental | PIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDG-MNSIARGQKIPIFSAAGLPHNEIAAQI |
PIDRGPVVL.EDFLD.MGQPINPQCRIYPEEMIQTGISA.D..MN.IARGQKIPIFSAA.LPHNEIAAQI | |
Retrocopy | PIDRGPVVLVEDFLDLMGQPINPQCRIYPEEMIQTGISATDA<MNIIARGQKIPIFSAAELPHNEIAAQI |
Parental | CRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPR |
C.QAGLVKKSKDVVDYSEENFAIV.AAM.VNM.TA.FFKSDFEENGSMDNVCLFLNLANDPTIE.IITPR | |
Retrocopy | CCQAGLVKKSKDVVDYSEENFAIVLAAMAVNM*TAQFFKSDFEENGSMDNVCLFLNLANDPTIE*IITPR |
Parental | LALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEG |
LALTTAEFLAYQCEKH.LVILTDMSSYAEALREVSAAREEVPG.RGFPGYMYTDLATIYER.G.VEG | |
Retrocopy | LALTTAEFLAYQCEKHELVILTDMSSYAEALREVSAAREEVPGQRGFPGYMYTDLATIYERTGQVEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003668 | 1 retrocopy | |
Homo sapiens | ENSG00000147416 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003888 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001791 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000794 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020040 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010477 | 1 retrocopy |
retro_tsyr_2096 ,
|
Tursiops truncatus | ENSTTRG00000013650 | 1 retrocopy |