RetrogeneDB ID: retro_mmur_874

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_1168:316255..316857(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARG2
• Ensembl ID: ENSMICG00000010837
• Aliases: None
• Description: arginase 2 [Source:HGNC Symbol;Acc:664]

Sequence

>retro_mmur_874
ACCACTTCATCTGAAAATCTCCACCCACAGCCACTTTAATTTCTCCTCAGTGAACTACAGGACAAAGTACCACAATGCCC
AGGATCTTCCTGGATCAAACCTTGTCTTTCTTCTCCAAGTATAGTGCATATTGGCCTAGAGAGATGTGGACCCTCCTGAA
CATTTTCTTTTAAGGAACTGTGATGATATCCAGTATTTTCTCATGAGAGACATTGATTGGCTTGGTATCCAGGAGGTTGT
GGAAAAGACATTTGATCTGCTGATTGGCAAAAGACAAAAGGCAATCCATTTGAGTTTTGGTGCATTTGACCCTGCAGTGG
CTCTAGCCACAGGAACCCCCATTGTAGGGGGACTGACTTCCGGAGAAGGCATGCAAGTTACTGAGGAAATTCATCACACA
GGGTTGCTGTGAGCACTGGGTCTCATTGAGGTGAGTCCTCAGCTGGCCACCGAAGAGGTGAGGCAAAGGCTACAGCCAGC
CTGGCAGTGGATGTGATTGCTTCAAGTCGGGGTCGGGCAGAGAAGGAGGGTGCTTTGTCTACCACCAACTTCCTGCTCTG
TGTTCATCAGATGAATCTGAAAATGAAGCAAGTGTGAGAATT

Alignment

ORF - retro_mmur_874 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.76 %
• Parental protein coverage: 57.55 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  TTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSPSIVYIGL-RDVDPPEHFILKNY-DIQYFSMR
          TTSS.NLH.QP..FLL.ELQDKVPQ.PG.SWIKPC.SSPSIV.IGL.RDVDPPEHF.L.N..DIQYF.MR
Retrocopy TTSSENLHPQPL*FLLSELQDKVPQCPGSSWIKPCLSSPSIVHIGL>RDVDPPEHFLLRNCDDIQYFLMR

Parental  DIDRLGIQKVMEQTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYITEEIHNTGLLS
          DID.LGIQ.V.E.TFDLLIGKRQ..IHLSF...AFDP..A.ATGTP.VGGLT..EGM..TEEIH.TGLL.
Retrocopy DIDWLGIQEVVEKTFDLLIGKRQKAIHLSF--GAFDPAVALATGTPIVGGLTSGEGMQVTEEIHHTGLL*

Parental  ALDLVEVNPQLATSE-EEAKATASLAVDVIASSFGQT-REGGHIVYDQLPTPSSPDESENEACVRI
          AL.L.EV.PQLAT.E..EAKATASLAVDVIASS.G...REGG..VY.QLP...S.DESENEA.VRI
Retrocopy ALGLIEVSPQLATEE<GEAKATASLAVDVIASSRGRA<REGGCFVYHQLPALCSSDESENEASVRI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_874 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_874 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000005722	1 retrocopy	retro_acar_91,
Choloepus hoffmanni	ENSCHOG00000007159	1 retrocopy	retro_chof_1179,
Dasypus novemcinctus	ENSDNOG00000004808	1 retrocopy	retro_dnov_251,
Microcebus murinus	ENSMICG00000010837	1 retrocopy	retro_mmur_874 ,
Monodelphis domestica	ENSMODG00000009978	1 retrocopy	retro_mdom_257,
Oryctolagus cuniculus	ENSOCUG00000000584	1 retrocopy	retro_ocun_277,