RetrogeneDB ID: retro_mmur_940

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_137670:391..1114(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KYNU
• Ensembl ID: ENSMICG00000017770
• Aliases: None
• Description: kynureninase [Source:HGNC Symbol;Acc:6469]

Sequence

>retro_mmur_940
TTTTATACTGGGCAGTTCTTTAATATTCCTGCCATCACCAAAGCTGGACAAGCAAAGGGTTGTTTTGTTGGCTTTGATCT
AGCTCATGCAGTTGGAAACGTTGAACTCCACTTACATGACTGGGGAGTTGATTTTGCCTGCTGGTGTTCCTACAAGTATT
TAAATGCAGGAGCAGGAGGTATTGCTGGTGCCTTTATCCATGAAAAGCACACCCATAAAATTAAACCCACATTAGTGGGA
TGGTTTGGCCATGAACTAAGCACAAGATTCAAAATGGATAACAAGCTGCAGTTAATCCCAGGTGTCAGTGGATTCCGAAT
TTCAAATCCTCCCATTTTGTTGGTTTGTTCCTTACAAGCTAGTTTAGAGATCTTTAAGCAGGCAACTATGAAAGCATTGA
GGAGAAAATCTATTTTGCTAACTGGTTATCTGGAATACCCGATGAAGCATTACTACAGCAAAGATAAAGCAGACACCAAG
AAACCAATGGTGAACATAATTACACCATCCCATATAGAGGATCGGGGTTGCCAGCTGACACTAACATTTTCTGTTTCTAA
GAAGGATGTTTTCCAAGAACTAGAAAAAAGAGGAGTAGTCTGTGACAAGCAGGAACCAAGTGGCATTCGAGTGGCTCCAG
TTCCTCTCTACAATTCTTTCCATGATGTTTATAGATTCATTAATCTGCTCACTTCTGTACTTGACTCTATAGGAACAAAA
AAT

Alignment

ORF - retro_mmur_940 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.72 %
• Parental protein coverage: 51.83 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FYTGQLFNIPAITKAGQEKGCFVGFDLAHAVGNVELHLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH
          FYTGQ.FNIPAITKAGQ.KGCFVGFDLAHAVGNVELHLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH
Retrocopy FYTGQFFNIPAITKAGQAKGCFVGFDLAHAVGNVELHLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH

Parental  THKIKPTLVGWFGHELSTRFKMXXXLQLIPGVSGFRISNPPILLVCSLQASLEIFNQATMKALRRKSILL
          THKIKPTLVGWFGHELSTRFKM...LQLIPGVSGFRISNPPILLVCSLQASLEIF.QATMKALRRKSILL
Retrocopy THKIKPTLVGWFGHELSTRFKMDNKLQLIPGVSGFRISNPPILLVCSLQASLEIFKQATMKALRRKSILL

Parental  TGYLEYLIKHYYSKDKADTKKPMVNIITPSRIEDRGCQLTXXXXXXXXXXXXXXXXXXXXCDKREPSGIR
          TGYLEY..KHYYSKDKADTKKPMVNIITPS.IEDRGCQLT....................CDK.EPSGIR
Retrocopy TGYLEYPMKHYYSKDKADTKKPMVNIITPSHIEDRGCQLTLTFSVSKKDVFQELEKRGVVCDKQEPSGIR

Parental  VAPVPLYNSFHDVYRFINLLTSVLDSTETKN
          VAPVPLYNSFHDVYRFINLLTSVLDS..TKN
Retrocopy VAPVPLYNSFHDVYRFINLLTSVLDSIGTKN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_940 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_940 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013126	1 retrocopy	retro_amel_501,
Loxodonta africana	ENSLAFG00000002172	1 retrocopy	retro_lafr_329,
Microcebus murinus	ENSMICG00000017770	1 retrocopy	retro_mmur_940 ,
Mustela putorius furo	ENSMPUG00000003685	1 retrocopy	retro_mputfur_503,
Pongo abelii	ENSPPYG00000012827	1 retrocopy	retro_pabe_1439,