RetrogeneDB ID: retro_mputfur_503

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896916.1:15152656..15153427(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KYNU
• Ensembl ID: ENSMPUG00000003685
• Aliases: None
• Description: kynureninase [Source:HGNC Symbol;Acc:6469]

Sequence

>retro_mputfur_503
CATGGCCTAGGAAAATGTCCTTGGATTACAGGAGATGAGATTATTTTAGGCCTTATGAATGACATTGTAGGAGCCAATAA
GAAAGAAATAGCCCTAATAAATGATTTGACTGTTAATTTACATCTTCTGCTATTATCCTTGTGTAAGCCTACCCCAAGAT
GGTATAAAATTCTGAAAGCCAAAGCCTTCCCTTCAGATCACTGTGCTATTGAGTCACAGCTTCAATTTCATAGGCTTAAC
ATTGAGGAAAGCATGTGGATGATAAAGCCAAGGGGGGGAAGAAAAGATTGAGTATAGAGGATATCCTTGAAGTAATCGAG
AAGGAAGGAGACTCAGTTGCAGTGATCCTGTTCAGTGGGCTGCATTTTAACACTGAATAGCTCTTTAATATATCTGCCAT
CACAAGAGCTGGACAAACAGAGCATTGTTTTGTTGGCATTAATCTAGCACATGCGGTTGGAAATGTTGAACTCCGCTTAC
ATGACTGGGGAGTTGATTTTGTTTGCTGGTACTCCTATAAGTATTTAAATTTAGGAGCAGGAAGTCTTGCTGGTGCCTTT
ATTCATGAAAAACATGCCCATACAATTAAAACTGAGCTAGTGGGATGGTTTGGCCATAAATCAGCACCTGATTTAAGGTG
AATTATAAACCGCAGTTAATCCCCGGGGTCGATGGATTTCAAATTTCAAACCCTCGCTTTTCTTGGTCTGTTCCTTACAC
ACCAGTTTAGAGATCTTTAAGCAAGCAACTATGAAAACATTGAGGAGAAAA

Alignment

ORF - retro_mputfur_503 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.72 %
• Parental protein coverage: 55.22 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  HDLGKRPWITGDETIVGLMNDIVGANEKEIALMNGLTVNLHLLLLSFFKPTPKRYKILLEAKAFPSDHYA
          H.LGK.PWITGDE.I.GLMNDIVGAN.KEIAL.N.LTVNLHLLLLS..KPTP..YKIL..AKAFPSDH.A
Retrocopy HGLGKCPWITGDEIILGLMNDIVGANKKEIALINDLTVNLHLLLLSLCKPTPRWYKIL-KAKAFPSDHCA

Parental  IESQLQLHGLNIEKSMRIIKPREG-EETLRTEDILEVIEKEGDSIAVILFSGLHFYTGQLFNIPAITKAG
          IESQLQ.H.LNIE.SM..IKPR.G....L..EDILEVIEKEGDS.AVILFSGLHF.T..LFNI.AIT.AG
Retrocopy IESQLQFHRLNIEESMWMIKPRGG<KKRLSIEDILEVIEKEGDSVAVILFSGLHFNTE*LFNISAITRAG

Parental  QAKGCFVGFDLAHAVGNVELHLHDWGVDFACWCSYKYLNSGAGGLAGAFVHEKHAHTIKPALVGWFGHE-
          Q...CFVG..LAHAVGNVEL.LHDWGVDF.CW.SYKYLN.GAG.LAGAF.HEKHAHTIK..LVGWFGH..
Retrocopy QTEHCFVGINLAHAVGNVELRLHDWGVDFVCWYSYKYLNLGAGSLAGAFIHEKHAHTIKTELVGWFGHK<

Parental  LSTRFKMDNKLQLIPGVGGFRISN-PPILLVCSLHASLEIFKQATMKALRRK
          .ST.FK...K.QLIPGV.GF.ISN.P...LVCSLH.SLEIFKQATMK.LRRK
Retrocopy IST*FKVNYKPQLIPGVDGFQISN<PSLFLVCSLHTSLEIFKQATMKTLRRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_503 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_503 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013126	1 retrocopy	retro_amel_501,
Loxodonta africana	ENSLAFG00000002172	1 retrocopy	retro_lafr_329,
Microcebus murinus	ENSMICG00000017770	1 retrocopy	retro_mmur_940,
Mustela putorius furo	ENSMPUG00000003685	1 retrocopy	retro_mputfur_503 ,
Pongo abelii	ENSPPYG00000012827	1 retrocopy	retro_pabe_1439,