>retro_mmus_476
GGCCACTTGCAGTCCGTATCCCAGTTCCTGCTTTCCCAGACCCCACCTGGACAGCAAGGTCTGCAGCTGAATCTTCTCTC
CTTTCCACAGCAACAAAGCACTCTACTCCTCCCACATACAGGGCCTGGCCTTGCCTCCCAGGCAGTTTGGGCGCCCTGGG
ATGTCAGCATCCTTTTTAGAGCCCCACCTGGATGCTCCTCAGCACCTGCCAGGGCCCAAGCAACTGCCTGGCCCCGGAGG
GAATGACTGACCTGGAGGAGCTGGAGAAGTTTGCCAAGACCTTCAAGCAGAGACGCATTAAGCTAGGCTTCACACAGGGA
GGTGTGGGATTGGCGATGAGAAAGCTATATGGCAATGATTTTAGCCAGACTACCATCTCTCTATTTGAGGCCCTCAACCT
GAGCTTCAAAAATATGTGCAAACTAAAGCAGCTGCTGGAGAAGTGGCTGAACAATGCAGAGTCCTCCCAGCCAGATACTT
CAGCGAGCACACCCAGCTCCTACCCCACTCTCAGCGAAGTGTTTGACACTAAGAGGAAGAAACAGACCAGCATCGAGACC
AACATCAGCCTGACTTTGGAGAAGATATTTCAAGATAAACCTCAACCCAGCTCGGAAGAGATTTCCTTGATTGCGGAGCA
GTTATCCATGGAGACGGAGGTGGTTAGAGTCTAGATCTGCAATCGACACCAAAAGGAAAAGAGAATCAACTGCCCCGTGG
CCACCCCTGTTAAGACCACCCATCTACAACTCCTGGCTTGTC
ORF - retro_mmus_476 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.94 % |
Parental protein coverage: |
61.1 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | GHLQSVSQFLLSQTPPGQQGLQPNLLSFPQQQSTLLLPQTGPGLASQAV-GRPGLSGSSLEPHLDAPQHL |
| GHLQSVSQFLLSQTPPGQQGLQ.NLLSFPQQQSTLLLP.TGPGLASQAV.GRPG.S.S.LEPHLDAPQHL |
Retrocopy | GHLQSVSQFLLSQTPPGQQGLQLNLLSFPQQQSTLLLPHTGPGLASQAV>GRPGMSASFLEPHLDAPQHL |
|
Parental | PG-PKHLPGPGGNDEPTDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSF |
| PG.P.....P.G....TDLEELEKFAKTFKQRRIKLGFTQG.VGLAM.KLYGNDFSQTTIS.FEALNLSF |
Retrocopy | PG>PSNCLAPEGM---TDLEELEKFAKTFKQRRIKLGFTQGGVGLAMRKLYGNDFSQTTISLFEALNLSF |
|
Parental | KNMCKLKPLLEKWLNDAESSPSDPSASTPSSYPTLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSE |
| KNMCKLK.LLEKWLN.AESS..D.SASTPSSYPTLSEVF..KRKK.TSIETNI.LTLEK.FQD.P.PSSE |
Retrocopy | KNMCKLKQLLEKWLNNAESSQPDTSASTPSSYPTLSEVFDTKRKKQTSIETNISLTLEKIFQDKPQPSSE |
|
Parental | EISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVATPVK-PPIYNSRLV |
| EIS.IAEQLSME.EVVRV..CNR.QKEKRINCPVATPVK.PPIYNS.LV |
Retrocopy | EISLIAEQLSMETEVVRV*ICNRHQKEKRINCPVATPVK>PPIYNSWLV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
0 .12 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .04 RPM |
SRP007412_heart |
0 .00 RPM |
0 .12 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .40 RPM |
SRP007412_liver |
0 .00 RPM |
0 .00 RPM |
SRP007412_testis |
0 .00 RPM |
5 .53 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_476 was not detected
No EST(s) were mapped for retro_mmus_476 retrocopy.
No TSS is located nearby retro_mmus_476 retrocopy 5' end.
retro_mmus_476 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_476 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.