RetrogeneDB ID: | retro_mmus_2201 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:129433859..129434712(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pou5f1 | ||
Ensembl ID: | ENSMUSG00000024406 | ||
Aliases: | Pou5f1, NF-A3, Oct-3, Oct-3/4, Oct-4, Oct3, Oct3/4, Oct4, Otf-3, Otf-4, Otf3, Otf3-rs7, Otf3g, Otf4 | ||
Description: | POU domain, class 5, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101893] |
Percent Identity: | 72.41 % |
Parental protein coverage: | 80.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | YCGPQVGLGLVPQVGVETLQPEGQAGARVESNSEGTSSEPCADRPNAVKLEKVEPTPEESQDMKALQKEL |
.CG.....G..PQ.GVETLQPE.QA.A.VESNSE...S.PCAD.P.AVKLE..EP.PE.SQDMK.LQKEL | |
Retrocopy | FCGGMAYCG--PQAGVETLQPESQARAGVESNSEEAFSGPCADHPSAVKLEMREPRPEGSQDMKVLQKEL |
Parental | EQFAKLLKQKRITLGYTQADVGLTLGVLFGKV-FSQTTICRFEALQLSLKNMCKLRPLLEKWVEEADNNE |
E.FAKLLKQKRITLGYTQ.DVGLTLGVLF.KV..SQTTI..FEA.QLSL..M.KLRPLLEKWVEEA..NE | |
Retrocopy | EKFAKLLKQKRITLGYTQTDVGLTLGVLFRKV<VSQTTIYCFEARQLSLMTMHKLRPLLEKWVEEAEDNE |
Parental | NLQEICKSETLVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIA--NQLGLEKDVVRVWFCNRRQ |
NLQEICKSET.VQA.K.K..SIEN.VR.SLE..FLKCP.PS.QQIT.I....QLG.EKD.VR.WFCNRRQ | |
Retrocopy | NLQEICKSETMVQAWKKKSASIENHVRQSLENEFLKCPEPSPQQITSISITMQLGMEKDMVRGWFCNRRQ |
Parental | KGKRSSIEYSQREEYEA-TGTPFPGGAVSFPLPPGP--HFGTPGYGSPHFTTLYSVPFPEGEAFPSV-PV |
KGKRSSIEYSQRE.YEA..G..F.G......L...P..HFGTP.YGSPHFTTL.....PEGEAFPSV.PV | |
Retrocopy | KGKRSSIEYSQREKYEA>SGDAFRGVGWGCILSSAPRPHFGTPSYGSPHFTTLLDT-CPEGEAFPSV>PV |
Parental | TALGSPMHSN |
.ALGSPMHSN | |
Retrocopy | IALGSPMHSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .04 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .04 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 4 .16 RPM |