RetrogeneDB ID: retro_mputfur_1082

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897010.1:755209..755723(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DERL1
• Ensembl ID: ENSMPUG00000001132
• Aliases: None
• Description: derlin 1 [Source:HGNC Symbol;Acc:28454]

Sequence

>retro_mputfur_1082
TTCTTGTATCAGAATTTTACAGGACTTGAAACAGGAGCTTTTGATAGGTCAGCCACCAATTTACTCATGCTCCTCTTTAA
CTGGAATTGCATCGTGAAGACCAGCTTAGCCATGAACATGCAGTTGCTGATGATTCCTCTGATCGTGTCAGTACTTTATG
TCTGGGCCCAGCTGAACAGAGACATGATTGTATCATTTTGGTTTGAAACACAAGTTAAGGCCTGTTATTTATCATGGTTA
TCCTTGGACTCAACTATATCATCGGAGGCTCGGTAATGAATGAGCTCATTGGAAATCTTGTGGGACATCTTTAATTTCTC
CTCATGTTCAGATACCCAATGACTTCGGATGAAGACATTTTCTATCCACACCTGTTTTTGTACTGCTGGCTGTCCAGCAG
GAGAGGAGGATGTCAGGATCCAGTGTGTCCCCTGCTAGCATGAGGTGAGCTGCTGATCTGAATGGTAGAGGTAGAAGACA
CCACTGGGGACAGGACTTTCAGCTTGGGGACCAA

Alignment

ORF - retro_mputfur_1082 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.32 %
• Parental protein coverage: 69.44 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWAQLNRDMIVSFWFG
          FLYQ..T.LETGAFD.R.A..L.MLLFNW.CIV.T.LAM.MQLLMIPLI.SVLYVWAQLNRDMIVSFWF.
Retrocopy FLYQNFTGLETGAFD-RSATNLLMLLFNWNCIVKTSLAMNMQLLMIPLIVSVLYVWAQLNRDMIVSFWFE

Parental  TRFKACYLPW-VILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPM-DLGGRNFLSTPQFLYRWLPSRRG
          T..KACYL.W.VILG.NYIIGGSV.NELIGNLVGHL.F.LMFRYPM.D.G.R.FLSTP.F........R.
Retrocopy TQVKACYLSW<VILGLNYIIGGSVMNELIGNLVGHL*FLLMFRYPM<DFG*RHFLSTPVFVLLAVQQER-

Parental  GVSGFGVPPASMRRAADQNGGGGGRHNWGQGFRLGDQ
          ..SG..V.PASMR.AAD.N.G.G.RH.WGQ.F.LGDQ
Retrocopy RMSGSSVSPASMR*AADLN-GRGRRHHWGQDFQLGDQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1082 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1082 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006519	1 retrocopy	retro_amel_364,
Canis familiaris	ENSCAFG00000000974	1 retrocopy	retro_cfam_754,
Cavia porcellus	ENSCPOG00000011870	1 retrocopy	retro_cpor_1520,
Myotis lucifugus	ENSMLUG00000009085	1 retrocopy	retro_mluc_2035,
Mustela putorius furo	ENSMPUG00000001132	1 retrocopy	retro_mputfur_1082 ,
Mus musculus	ENSMUSG00000022365	1 retrocopy	retro_mmus_919,
Rattus norvegicus	ENSRNOG00000005551	2 retrocopies	retro_rnor_1206, retro_rnor_2717,
Sarcophilus harrisii	ENSSHAG00000011915	1 retrocopy	retro_shar_588,