RetrogeneDB ID: retro_mputfur_1607

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897348.1:326517..327040(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000000064
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MDH2
• Ensembl ID: ENSMPUG00000016000
• Aliases: None
• Description: malate dehydrogenase 2, NAD (mitochondrial) [Source:HGNC Symbol;Acc:6971]

Sequence

>retro_mputfur_1607
GCCCTTGCCTGGCCTGCCCGCACTGCTCCCACAGCAGCTTCAGCACCTGGACCAAGAACAGTGTGTAAAGTAGCTGTGCT
AGGACTTTTGGAGGAATAGGGCAGCCCCTTTCACTTCTCCTCAAAACATACCCTTGGTAAGCCTCCTGAATGTCTACAAT
GTTGCTCATGTACCTGAGTAGCCACAGATCAAAGCCACATTGAGATCAAAGCAACTATGAAAGGCTACCTTGAACCTAAG
CAGTTGTCAGACTGCCTGAAAAATTGTGATGTGGTAGTTATTCCAGTAGGAGTCTTGAGAAAACCAGGCATGACACAGGA
TATCTGTTCCAGACCAATGCCACAGTTGTGGCTACCCTGACTACTGCCTGTGCCCAGCATTGCCCTGAGGCCATGAGCTG
TACCACTTTAAATGTGATTAACTCCACCATCCCAATCACAACAGCATTTTCAAGAAACATGGAACATACAACCCCAATAA
AATCTTTGGGGTGACAACCCTGGGCATTATCAAAACCAACACT

Alignment

ORF - retro_mputfur_1607 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.19 %
• Parental protein coverage: 50.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  ALARPAGAALRRSFSTSAQKNAKVAVLG-ASGGIGQPLALLLK-NSPLVSRLTLYDIAHTPG-VAADLSH
          ALA.PA..A.............KVAVLG...GGIGQPL.LLLK.N.PLVS.L..Y..AH.P..VA.D.SH
Retrocopy ALAWPARTAPTAASAPGPRTVCKVAVLG<TFGGIGQPLSLLLK<NIPLVSLLNVYNVAHVPE<VATDQSH

Parental  IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRD-DLFNTNASIVATLTAACAQHCPEAMICI
          IE..AT.KGYL.P.QL.DCLK.CDVVVIP.GV.RKPGMT.D..LF.TNA..VATLT.ACAQHCPEAM.C.
Retrocopy IEIKATMKGYLEPKQLSDCLKNCDVVVIPVGVLRKPGMTQD<YLFQTNATVVATLTTACAQHCPEAMSCT

Parental  ISNPVNSTIPIAT-EVFKKHGAYNPNKIFGVTTLDIVRANT
          ..N..NSTIPI.T...FKKHG.YNPNKIFGVTTL.I...NT
Retrocopy TLNVINSTIPITT<SIFKKHGTYNPNKIFGVTTLGIIKTNT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1607 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1607 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010846	1 retrocopy	retro_amel_361,
Canis familiaris	ENSCAFG00000013515	2 retrocopies	retro_cfam_182, retro_cfam_41,
Myotis lucifugus	ENSMLUG00000017795	1 retrocopy	retro_mluc_1948,
Monodelphis domestica	ENSMODG00000013680	1 retrocopy	retro_mdom_1711,
Mustela putorius furo	ENSMPUG00000016000	2 retrocopies	retro_mputfur_1607 , retro_mputfur_478,
Mus musculus	ENSMUSG00000019179	1 retrocopy	retro_mmus_2451,
Otolemur garnettii	ENSOGAG00000009705	1 retrocopy	retro_ogar_3068,
Pteropus vampyrus	ENSPVAG00000003397	1 retrocopy	retro_pvam_981,
Tupaia belangeri	ENSTBEG00000003190	1 retrocopy	retro_tbel_440,
Drosophila melanogaster	FBgn0262559	2 retrocopies	retro_dmel_54, retro_dmel_76,