RetrogeneDB ID: retro_mputfur_1629

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897428.1:30785..31367(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TWF1
• Ensembl ID: ENSMPUG00000000364
• Aliases: None
• Description: twinfilin actin-binding protein 1 [Source:HGNC Symbol;Acc:9620]

Sequence

>retro_mputfur_1629
TCCCATCAGTCCCACCTCCAAGCAAGTGAAGATGTTAAAGATACTTTTGCCAGAGAAGAAATGAAAAATATTGAGTTCTA
AAAATATCTGTTGAAAAAGAGACACTTGTGATTGCATCATGTAGTCTGCCTTCCAGTTCCTGGGGTAAGGATTATGATTC
CTTTGTTTTACCCCTCCTGGAGGACAAACAGCCATGCAACATAGTGTTCAGTTTAAACTCTCAGAATGCCCAAGGATATG
AATGGATATTCACTTCCTGGTCTCCAGAATATTCTCATGATCATCAATATATGTTGTATGTAGGAACTAGTGCAACTCTG
AAAAAGGAGTTTGGAGGGGTCCACATTACAGATGAAGTGTTTGGAACAGTAAAGGAAGATGCATCATTACACGGATATAA
AAAACAGTCTTCTGTCACAATCTTCTCCTGCCCCATTGACTGCAGCTGAGGAAGAATCACGACAGATTAAAATTAATGAG
GCACAAACTGACATGGGTGTGGACATGAAGCATCAAACACTACAAGGAGTAACATTTCCTATTTCTTGAGAAGCTTTTCA
AGCTTTGGAAACATTAAGTAAC

Alignment

ORF - retro_mputfur_1629 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.55 %
• Parental protein coverage: 55.43 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SHQTGIQASEDVKDIFARA-RNGKYRLLKISIENEKLVIGSCSQPSDSWDKDYDSFVLPLLEDKQPCYIL
          SHQ...QASEDVKD.FAR..RN.KY..LKIS.E.E.LVI.SCS.PS.SW.KDYDSFVLPLLEDKQPC.I.
Retrocopy SHQSHLQASEDVKDTFARE<RNEKY*VLKISVEKETLVIASCSLPSSSWGKDYDSFVLPLLEDKQPCNIV

Parental  FRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLNGYKKY-LV
          F.L.SQNAQGYEWIF..WSP..SH..Q.MLY..T.ATLKKEFGG.HI.DEVFGTVKED.SL.GYKK..L.
Retrocopy FSLNSQNAQGYEWIFTSWSPEYSHDHQYMLYVGTSATLKKEFGGVHITDEVFGTVKEDASLHGYKKQ>LL

Parental  SQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPISREAFQALEQLSN
          SQSSPAPLTAAEEE.RQIKINE.QTD.GVD.KHQTLQGV.FPIS.EAFQALE.LSN
Retrocopy SQSSPAPLTAAEEESRQIKINEAQTDMGVDMKHQTLQGVTFPIS*EAFQALETLSN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1629 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1629 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017332	1 retrocopy	retro_amel_1224,
Choloepus hoffmanni	ENSCHOG00000008386	5 retrocopies	retro_chof_1525, retro_chof_2013, retro_chof_2569, retro_chof_391, retro_chof_509,
Homo sapiens	ENSG00000151239	2 retrocopies	retro_hsap_1819, retro_hsap_4916,
Monodelphis domestica	ENSMODG00000018535	1 retrocopy	retro_mdom_167,
Mustela putorius furo	ENSMPUG00000000364	1 retrocopy	retro_mputfur_1629 ,
Mus musculus	ENSMUSG00000022451	1 retrocopy	retro_mmus_2961,
Nomascus leucogenys	ENSNLEG00000017931	1 retrocopy	retro_nleu_2877,
Otolemur garnettii	ENSOGAG00000007525	1 retrocopy	retro_ogar_1058,
Pan troglodytes	ENSPTRG00000004846	1 retrocopy	retro_ptro_3279,
Rattus norvegicus	ENSRNOG00000022507	1 retrocopy	retro_rnor_2176,