RetrogeneDB ID: retro_mputfur_240

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896899.1:7239521..7239915(-)
• Located in intron of: ENSMPUG00000016871

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CENPH
• Ensembl ID: ENSMPUG00000014646
• Aliases: None
• Description: centromere protein H [Source:HGNC Symbol;Acc:17268]

Sequence

>retro_mputfur_240
CAACCCAAGAAGTAAGCAGCTGCCAAGCCCTCTGACTCTGGAGTGGGAGGTGGGGAGGGTGGGCCAGCACAGGTCTGGTG
TCCAGGTGTGCATCCCAAGGACCACTTCACCCTGCTGCTCAGGCTGAGAGCACAGGGAAAATAATAACTCCTGGACTATA
AATCAGTGGTTGATGCAAATGAAGAAAAAGCTTTAGAACAAATCGTGCAAGATAAGCAAATTGAAGCTAAAATTGAAGAC
CTGGAAAGGGAACCTGAAGAGTTAAAAATTGCTTTTGAAATGAAAAAGGCTTGTATTAGATAGGATGCAACTTTGAGCTG
CACTTAAAAAAACCTGGAGAAAATTAACCCCAAGTGTGCTCATGGATAACATGAAACATGTATTAAAGCTAAAT

Alignment

ORF - retro_mputfur_240 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.15 %
• Parental protein coverage: 54.25 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QPGKQAATEPADSGAGGGEGEPPQVAGAQAARPEDRLTLLLRLRAQTKQQLLEYKSMVDATEEKSPEQIL
          QP.K.AA..P.DSG.GGGEG.P.QV.......P.D..TLLLRLRAQ.K..LL.YKS.VDA.EEK..EQI.
Retrocopy QPKK*AAAKPSDSGVGGGEGGPAQV-WCPGVHPKDHFTLLLRLRAQGK**LLDYKSVVDANEEKALEQIV

Parental  QDKQVEAKIEDLENEIEEVKIAFEMKK-LALDRMQLSTALKKNLEKNNPRTSVLMDNMKHILKLN
          QDKQ.EAKIEDLE.E.EE.KIAFEMKK.L.LDRMQL..ALKK...K..P..SVLMDNMKH.LKLN
Retrocopy QDKQIEAKIEDLEREPEELKIAFEMKK>LVLDRMQL*AALKKTWRKLTP--SVLMDNMKHVLKLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_240 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_240 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000007717	1 retrocopy	retro_cfam_961,
Choloepus hoffmanni	ENSCHOG00000011338	2 retrocopies	retro_chof_1939, retro_chof_982,
Monodelphis domestica	ENSMODG00000025601	1 retrocopy	retro_mdom_1859,
Mustela putorius furo	ENSMPUG00000014646	1 retrocopy	retro_mputfur_240 ,
Sarcophilus harrisii	ENSSHAG00000007822	4 retrocopies	retro_shar_805, retro_shar_806, retro_shar_807, retro_shar_809,
Tupaia belangeri	ENSTBEG00000011867	2 retrocopies	retro_tbel_4318, retro_tbel_4535,
Tarsius syrichta	ENSTSYG00000002098	1 retrocopy	retro_tsyr_199,