RetrogeneDB ID: | retro_tsyr_199 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_5072:49656..49943(+) | ||
Located in intron of: | ENSTSYG00000014373 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CENPH | ||
Ensembl ID: | ENSTSYG00000002098 | ||
Aliases: | None | ||
Description: | centromere protein H [Source:HGNC Symbol;Acc:17268] |
Percent Identity: | 87.63 % |
Parental protein coverage: | 73.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EEKTPEHIMQEKQIEAKIEDLENELEDAKIAFEMKTLALDRM-QLSIALIRYLEKVNTKSSVLVDTMKHI |
EEKTPEHI..EKQIEAKIEDLENELEDAK.A.E.KTLALDR..QLSIAL.RYLEKVNTKSSVLV..MKHI | |
Retrocopy | EEKTPEHIRREKQIEAKIEDLENELEDAKNASEVKTLALDRI<QLSIALKRYLEKVNTKSSVLVHNMKHI |
Parental | LKLNKLIMKSQQESSDLEEKLLDVRKK |
LKLNKLIMKSQQ.SSDLEEKLLDVRK. | |
Retrocopy | LKLNKLIMKSQQDSSDLEEKLLDVRKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007717 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011338 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000025601 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014646 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007822 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000011867 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002098 | 1 retrocopy |
retro_tsyr_199 ,
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