RetrogeneDB ID: retro_mputfur_259

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896900.1:35852251..35853218(+)
• Located in intron of: ENSMPUG00000008772

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UCHL5
• Ensembl ID: ENSMPUG00000004619
• Aliases: None
• Description: ubiquitin carboxyl-terminal hydrolase L5 [Source:HGNC Symbol;Acc:19678]

Sequence

>retro_mputfur_259
ATGACAGGCAGTACTAGGGAGTGGTGCCTCATAAAAAGGGACCCTAGGATCTTGACGGAACTCACTAAAGAATTTGGTTG
CCAAAGAGCCCAAGTGGAAGAATTAAGGAGTTTAGAGCCTGAGAATTTTGAAGAGTTAAAGCCAGTTGATGGGTTAATTT
TTCTTTTCAAGTGGCAGCCAGGAGAAGAACCAGCAGGCTCTGTAGTTCAGGACTCTGGACCTGACAGGATATATTTGCCA
AGCAGGTAATTAAAGATGCTTGTGCTACTCAAGCCATAGTAAGTGTGTTATTGAACTGTACCCATCAAGGTGTCTGTTTA
GGAGAGACTTTATCAGAGTTTCAAGAATTTTCACAAAGTTTGATGCAGCTATTGAAAGGTTTGGCACTCAACAGTTCAGA
TGTGATTTGACACGTACACAACAGTTTTGCCAGACAGCAGATGTCTGAATTTGGTGCAAAGACATCAGCAAAAGAAGATG
CTTTTCACTTTGTCAGTTATGTTCCTGTAAATGGAAGATTGCATTAATTAGGTGGATGAAGAGAAGGACTGATTGGTTTC
TGTACGCGCCTCCAGATGACTGGGTCAGTGCAGTGAGGCTAGTCATAGAAAAAAGGGTACAAAAGTACGGCAAAGGTGAA
ATTTGATTTAACTTAATGGGCATTGTATCTGATAGAAAAATGATATATGAAGAGAAGATAGCGGAGTTACAAAGACAATT
TGCTGAGGAACCAGTGGATACAGATCAGGGTAATAATATAACTGCTGTTCAGTCAGAGGTTCCCAGAAACCAGATGCTTA
TTAAAGAAGAAATACAGAAACTAAAAAGATTTGAAAATATCAAAAGGAAGTATAATTATCTGCCTTTCATTTTGGAATCA
TTAAAGACTCTAGCAGAACACCAGCAGTTAATACCACTAGTAGATAAGGCAAAAGAGGACCAGAATGCAAAGAAAGCACA
GGAAACC

Alignment

ORF - retro_mputfur_259 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.76 %
• Parental protein coverage: 99.7 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQ
          MTG...EWCL...DP...TEL.K.FGC..AQVEE..SLEPENFE.LKPV.GLIFLFKWQPGEEPAGSVVQ
Retrocopy MTGSTREWCLIKRDPRILTELTKEFGCQRAQVEELRSLEPENFEELKPVDGLIFLFKWQPGEEPAGSVVQ

Parental  DSRLDTIF-FAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQV
          DS..D.I..FAKQVI..ACATQAIVSVLLNCTHQ.V.LGETLSEF.EFSQS.....KGLAL..SDVI..V
Retrocopy DSGPDRIY<FAKQVIKDACATQAIVSVLLNCTHQGVCLGETLSEFQEFSQSLMQLLKGLALNSSDVI*HV

Parental  HNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQ-DDWISAVRPVIEKRI
          HNSFARQQM.EF.AKTSAK.EDAFHFVSYVPVNGRL..L.G.REG.I......Q.DDW.SAVR.VIEKR.
Retrocopy HNSFARQQMSEFGAKTSAK-EDAFHFVSYVPVNGRLH*LGG*REGLIGFCTRLQ<DDWVSAVRLVIEKRV

Parental  QKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGSNMLSAIQSEVAKNQMLIEEEVQKL
          QKY..GEI.FNLM.IVSDRKMIYE.KIAELQRQ.A.EEP.DTDQG.N...A.QSEV..NQMLI.EE.QKL
Retrocopy QKYGKGEI*FNLMGIVSDRKMIYEEKIAELQRQFA-EEPVDTDQGNN-ITAVQSEVPRNQMLIKEEIQKL

Parental  KRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQET
          KR...ENI.RK.NYLPFI.E.LKTLAEHQQLIPLV.KAKE.QNAKKAQET
Retrocopy KRF--ENIKRKYNYLPFILESLKTLAEHQQLIPLVDKAKEDQNAKKAQET

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_259 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_259 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000015914	1 retrocopy	retro_amel_1462,
Monodelphis domestica	ENSMODG00000012129	1 retrocopy	retro_mdom_1507,
Mustela putorius furo	ENSMPUG00000004619	1 retrocopy	retro_mputfur_259 ,
Ictidomys tridecemlineatus	ENSSTOG00000000772	1 retrocopy	retro_itri_1814,