RetrogeneDB ID: retro_mputfur_269

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896900.1:21816639..21816906(-)
• Located in intron of: ENSMPUG00000007397

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000002168
• Aliases: None
• Description: None

Sequence

>retro_mputfur_269
AAGTACCAACCCCACAAAGTGACACAGTATAAGAAAGGCAAAGATTCTCTTTACACCCAGGGAAAACAACATCATGACAG
GAAGAGTGGCTATGGTGGGCAGACTAAGTGGATTTTCTGGAAAAAAGCTAAAACTCCAAAGACGACTGTGCTGAGGGTTA
AATGTGTTGAGCCCAACTGCAGATCTGAGAGAACGCTGGCCATTAAGCGATGCAAACAATATGAACTGGGAGGAGACACG
AAGAGAAAAGGTCCAGGTCTGAGCTTC

Alignment

ORF - retro_mputfur_269 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.56 %
• Parental protein coverage: 85.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIK
          K.QPHKVTQYKKGKDSLY.QGK...DRK.SGYGGQTK.IF.KKAKT.K..VLR..CVEPNCRS.R.LAIK
Retrocopy KYQPHKVTQYKKGKDSLYTQGKQHHDRK-SGYGGQTKWIFWKKAKTPKTTVLRVKCVEPNCRSERTLAIK

Parental  RCKHFELGGDKKRKGQVIQF
          RCK..ELGGD.KRKG....F
Retrocopy RCKQYELGGDTKRKGPGLSF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_269 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_269 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000008503	1 retrocopy	retro_acar_98,
Canis familiaris	ENSCAFG00000017688	1 retrocopy	retro_cfam_154,
Loxodonta africana	ENSLAFG00000017385	1 retrocopy	retro_lafr_114,
Monodelphis domestica	ENSMODG00000025578	2 retrocopies	retro_mdom_1878, retro_mdom_971,
Mustela putorius furo	ENSMPUG00000002168	3 retrocopies	retro_mputfur_269 , retro_mputfur_530, retro_mputfur_94,
Sarcophilus harrisii	ENSSHAG00000013479	1 retrocopy	retro_shar_467,
Tupaia belangeri	ENSTBEG00000015808	1 retrocopy	retro_tbel_52,