RetrogeneDB ID: retro_mputfur_415

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896908.1:13006851..13007628(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: Ist1
• Ensembl ID: ENSMPUG00000007857
• Aliases: None
• Description: increased sodium tolerance 1 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1919205]

Sequence

>retro_mputfur_415
TTCAGGCAGGAGGAACAGCACAGCATGCTGGGCTCTGGATTTAAAGCTGAGCGTTTACGAGTCAATTTGAGATTAGTCAT
AAACCGTCTTAAACTGTTGGAGAAAAAAAAAACGGAACTGGCCCAGAAAGCGAGGAAAGAGATTGCTGACTATCTGGCTG
CTGGGAAAGATGAACGAGCTCGGATTCGAGTGGAGCACATTATCCGAGAAGACTACCTTGTGGAGGCCATGGAGATTCTG
GAGCTGTATTGTGATCTGCTGCTGGCTCGGTTTGGCCTCATCCAATCTATGAAGGAACTAGACTCTGGTCTGGCCGAATC
CGTGTCTACGCTGATATAGGCTGCTCCTCGGCTCCAGTCAGAAGTGGCTGAGTTGAAAATAGTTGCTGATCAGCTCTGTG
CCAAGTATAGCAAGGAATATGGCAAGCTATGTAGGACCAATCAGATTGGAACTGTGAATGACAGGCTGATGCACAAACTG
AGTGTGGAAGCCCCACCTAAAATCCTGGTGGAGAGATACCTGATTGAAATTGCCAATAACTACAATGTGCCCTATGAGCC
TGACTCTGTGGTCATGGCAGAAGCTCCTCCTGGGGTAGAGACAGATCTTATTGATGTTGGATTCACAGATGATGTGAAGA
AAGGGGGCCCTGGAAGAGGAGGAAGGGGTGGTTTCACAGCACCAATTGGTGGACCTGATGGAACAGTACCAGTGCCTATG
CCCATGCCCTCTCCAAGTACTCCTTTCTCCTACCCACTGCCAAAGGGACCAGTTGAT

Alignment

ORF - retro_mputfur_415 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.79 %
• Parental protein coverage: 74.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FFQEEQHSMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIRE
          F.QEEQHSMLGSGFKAERLRVNLRLVINRLKLLE....ELAQKARKEIADYLAAGKDERARIRVEHIIRE
Retrocopy FRQEEQHSMLGSGFKAERLRVNLRLVINRLKLLEXXXXELAQKARKEIADYLAAGKDERARIRVEHIIRE

Parental  DYLVEAMEILELYCDLLLARFGLIQSMKEKEHACAGGVGGVERWVEEQRERIILLRCVADQLCAKYSKEY
          DYLVEAMEILELYCDLLLARFGLIQSMKE.....A..V................L..VADQLCAKYSKEY
Retrocopy DYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLI*AAPRLQSEVAELKIVADQLCAKYSKEY

Parental  GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVMAEAPPGVETDLIDVGFTD
          GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIA.NYNVPYEPDSVVMAEAPPGVETDLIDVGFTD
Retrocopy GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIANNYNVPYEPDSVVMAEAPPGVETDLIDVGFTD

Parental  DVKKGGPGRGGGGGFAAPIGGPDGTVPVPMPMPMPMPSPSTPFSYPLQKGPSD
          DVKKGGPGRGG.GGF.APIGGPDGTVPVPMPMP.P....STPFSYPL.KGP.D
Retrocopy DVKKGGPGRGGRGGFTAPIGGPDGTVPVPMPMPSP----STPFSYPLPKGPVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_415 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_415 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015051	1 retrocopy	retro_cjac_1906,
Dipodomys ordii	ENSDORG00000002409	1 retrocopy	retro_dord_398,
Gorilla gorilla	ENSGGOG00000001863	1 retrocopy	retro_ggor_1446,
Mustela putorius furo	ENSMPUG00000007857	1 retrocopy	retro_mputfur_415 ,
Pongo abelii	ENSPPYG00000007522	1 retrocopy	retro_pabe_1695,
Sus scrofa	ENSSSCG00000002743	1 retrocopy	retro_sscr_349,