RetrogeneDB ID: retro_mputfur_428

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896909.1:12597146..12597718(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TSPAN17
• Ensembl ID: ENSMPUG00000012505
• Aliases: None
• Description: tetraspanin 17 [Source:HGNC Symbol;Acc:13594]

Sequence

>retro_mputfur_428
ACCTTTCTGCTCAAGTTTTTCTCCGTGTTCTTGGGTCTCATCGTCTTCCCGGAGCTGGCATCAGGGATCTTGGCCTTTGT
GTTTGAGAACATAATTTGAGACCTGCTCAGTTTCTTCCTCAACAAAAATGTCAAGGCCTTTCGGGACAACATTGAGTTCC
AGAACCTTATTGACTTTGCTCGGGAATAGCCATCTTGCTATGGAGCCAGGGGGCCTAATGACTGGAACCTCAATATTTAT
TTCAACTGCACTGACTTGAACTCTAGCTGGGAGCACTGCACGGTGTCCTCCTGCTGCATCAGAGACCCTGCAGAGATGTC
CTCAGCACCCAATGTGGCTCAGACTCCAGGCTCAAACTGGAGCTGGAGCAGCAGAGCTCCATCCACACCAAAGGCTGCTA
CGTGGACCAGTTCGACAAGTGGCTGCAGGACAACCTGAATGCTGTGGCTGGAGTCTTTGCGGCCATCACCCTCCTCCAGA
TCTTTGGTATCTCTTTGGCCCAGAGCCTTGTGAATGATATCAAAGCAGTGAAGGCCAACTGGTGAAGCTGCCACAGTGGC
CATGACTACCTG

Alignment

ORF - retro_mputfur_428 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.09 %
• Parental protein coverage: 67.97 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNFFINNNVKAYRDDIDLQNLIDFAQEYWSCCGAR
          TFLLKFFSVFLGLI.F.ELA.GILAFVF...I.D.L.FF.N.NVKA.RD.I..QNLIDFA.E..SC.GAR
Retrocopy TFLLKFFSVFLGLIVFPELASGILAFVFENII*DLLSFFLNKNVKAFRDNIEFQNLIDFARE*PSCYGAR

Parental  GPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAE-DVLNTQCGYDVRLKLELEQQGSIHTKGC-VGQF
          GPNDWNLNIYFNCTDLN.S.E.C.V..SCC.RDPAE.DVL.TQCG.D.RLKLELEQQ.SIHTKGC.V.QF
Retrocopy GPNDWNLNIYFNCTDLNSSWEHCTVS-SCCIRDPAE<DVLSTQCGSDSRLKLELEQQSSIHTKGCYVDQF

Parental  EKWLQDNLIVVAGVFVGIALLQIFGICLAQNLVSDIKAVKANWIKHDDGYKLL
          .KWLQDNL..VAGVF..I.LLQIFGI.LAQ.LV.DIKAVKANW.....G...L
Retrocopy DKWLQDNLNAVAGVFAAITLLQIFGISLAQSLVNDIKAVKANW*SCHSGHDYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_428 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_428 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007218	2 retrocopies	retro_amel_1365, retro_amel_979,
Canis familiaris	ENSCAFG00000016638	2 retrocopies	retro_cfam_1585, retro_cfam_704,
Callithrix jacchus	ENSCJAG00000007278	1 retrocopy	retro_cjac_2289,
Equus caballus	ENSECAG00000022322	1 retrocopy	retro_ecab_554,
Felis catus	ENSFCAG00000007803	1 retrocopy	retro_fcat_1133,
Mustela putorius furo	ENSMPUG00000012505	1 retrocopy	retro_mputfur_428 ,