RetrogeneDB ID: retro_mputfur_668

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896933.1:8742090..8742741(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZDHHC6
• Ensembl ID: ENSMPUG00000002043
• Aliases: None
• Description: zinc finger, DHHC-type containing 6 [Source:HGNC Symbol;Acc:19160]

Sequence

>retro_mputfur_668
CAGGATAGTAAAGCCCGCCAAGCATATAAGGCACTATGATTGCGTCACTGCAGAAGATCTAACAGGTGTGTGATAAAGAT
GTACCATTGGTCTCCTTGGATGAACAACTGCTATGGTTCCCAAAATCATGCTTCCTCCACACTGTTTCTCCTTGAGAACC
CCTGGGTTGTATTCATGCTGCCTTCATCTTTGTTATGACTATGTTTACACAGCTTTATAGTTGGCTCTCCTTTGGGAGAA
ATATGCTGAAGATTGATATGAATGCAGCTTGGAGAGATCCTCTCCAAGGATCCTCTCCAATTATTCCCTTCAAGTGAGCA
GCATTGGCGGTCACCTTGTTTGCCTAGAGATTAACTTTAGGAACAACCATTGCTGTTGGGATGTTATTTTGTAACCAGAT
GAAAACAATTTTCACAAATGAAACTTCTGTTGAATCCTAGGTTGAAAAAAAAGCTAAAGATCAATTTCAATATTACCAAC
TAGATGAGGTTTTACCTTACGATATGGAAGTAGATGGAAGAACTTTAAATGGGTATTTACATGGTCAGGGTCCCTGAAGG
AGATGGGCTAGAGTGGCCAATTACAGAAGGCTGTCACCAATAGAACTTAACAGTAGAACAACTGAGACAAAAAACAGATA
AAAGAGTCAGA

Alignment

ORF - retro_mputfur_668 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.16 %
• Parental protein coverage: 52.3 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  QYCKVCQAYKAPRSHHCRKCNRCVMKMDHHCPWINNCCGYQNHASFTLFLLL-APLGCIHAAFIFVMTMY
          Q..K..QAYKA....HCR..NRCV.KM.H..PW.NNC.G.QNHAS.TLFLL...PLGCIHAAFIFVMTM.
Retrocopy QDSKARQAYKAL*LRHCRRSNRCVIKMYHWSPWMNNCYGSQNHASSTLFLLE<EPLGCIHAAFIFVMTMF

Parental  TQLYNRLSFGWNTVKIDMSAARRDPL----PIIPFGLAAFAATLFALGLALGTTIAVGMLFFIQMKIILR
          TQLY..LSFG.N..KIDM.AA.RDPL....PIIPF..AA.A.TLFA..L.LGTTIAVGMLF..QMK.I..
Retrocopy TQLYSWLSFGRNMLKIDMNAAWRDPLQGSSPIIPFK*AALAVTLFA*RLTLGTTIAVGMLFCNQMKTIFT

Parental  NKTSIESWIEEKAKDRIQYYQLDEVFVFPYDM-GSRWKNFKQVFTWSG-VPEGDGLAWPVRKDCHPYSLT
          N.TS.ES.....AKD..QYYQLDE..V.PYDM.GSRWKNFK.VFTWSG.VPEGDGL.WP....CH...LT
Retrocopy NETSVES*VXXXAKDQFQYYQLDE--VLPYDM<GSRWKNFKWVFTWSG<VPEGDGLEWPITEGCHQ*NLT

Parental  IEQLKQKADKRVR
          .EQL.QK.DKRVR
Retrocopy VEQLRQKTDKRVR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_668 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_668 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000015401	1 retrocopy	retro_amel_1120,
Canis familiaris	ENSCAFG00000010960	1 retrocopy	retro_cfam_2178,
Choloepus hoffmanni	ENSCHOG00000012828	1 retrocopy	retro_chof_1480,
Felis catus	ENSFCAG00000030784	1 retrocopy	retro_fcat_1193,
Loxodonta africana	ENSLAFG00000008129	1 retrocopy	retro_lafr_304,
Mustela putorius furo	ENSMPUG00000002043	1 retrocopy	retro_mputfur_668 ,
Mus musculus	ENSMUSG00000024982	1 retrocopy	retro_mmus_1740,
Otolemur garnettii	ENSOGAG00000030535	1 retrocopy	retro_ogar_1652,
Ictidomys tridecemlineatus	ENSSTOG00000013840	1 retrocopy	retro_itri_308,
Tarsius syrichta	ENSTSYG00000009673	2 retrocopies	retro_tsyr_1653, retro_tsyr_1771,