RetrogeneDB ID:

retro_mtru_41

Retrocopy
location
Organism:Barrel medic (Medicago truncatula)
Coordinates:6:26536123..26537866(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:MTR_6g071555
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:MTR_1g090110
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mtru_41
ATGTCTTCGTCGGTGCAACAAGTTGTCAAGCGTGCCAAATATAAATCCACCGTGAAAGATCCTGGTACTCCTGGTGTTAT
CAAATTGACTCGACCGAAACTTGTTTTCAAGCCTAATGATCCAACATCAAACAACAAGCTTGACGTTGATTTCAGATTAA
TCAAAAGTCAAAAAAACACCAAAGAGGGGTCAAACAAACAAACGTGGCTTAAGCTTTTACATTCTCAAGGCAGTTACATC
TTTGAGTTTGAAAGCTTTTCGGATCTTCATGTTTGCCGGGAATTCGCTGCTGGTATTATTAGCAAGCCTGTAGAAGCTCC
AAAAGTTGTTTCAGATGAACAACTTAGCACTGCTGAAATGACACTGAGGATAAAGCTATTGGGAGAAGATAGTAAATTGA
AGAAGATTCATAAGGAACTTGTGATGAGTGATAAGCTTACAGAATCAGAATTTTGGGCTACAAAGAAGAAATTGCTCGAC
CAAGATGAAAGCCGAAAGTTAACACAAAGGATTGGATTTAAAAATTGTTTGATCTTCGACACAAAGCCTACTACTAGTGA
CGGTCGGATAAATATAGTTAAATTTCAATTGACTCGAGAAATAAAATATCAGATTTTTGCTCTCAAACCAGCAATTCACC
AGGCATTCCTCAATTTTGTACCGAGTAACATGAGCGAGGTAGATTTCTGGAACAAATACTTCAAAGCTGAATATCTCCAT
AGTACCAAAAATGCTATTGCAGCAGCTGCTGAGGCTGCTGAAGATGAGGATCTTGCTGTTTTTTTGAAAGATGACGAGAT
ATTAAAAAATGAAGCTCGAAAGAAGGTTCGACGGATTGATCCAACTTTAGACATGGAAGCAGACCAAGGAGATGATTACA
CTCATCTTCCTGACCACGGGATCTTCCGTGATGGTTGCAAGGAAACATCTGAAGCTCAAAATACTCTTTATCGAAGAACG
TTGTTGCAAGATCTCAACAGACAAAGTGAGGTGGTTCTTGAAGGAAAAACTTTAGATATAGATATGGAACATCCAAGAAC
AGAAGTAGAAGTGCTTGCTCGGAGAAAACATGAATCTGATGGGGTTGTGGAGGAGAGGCGAAACAGAATTTCTAAGACAG
CCCAGATTGAAGATCTTCAGGCACAAGATAATCATCCATTTGTACCACTTTGTATCAAGGATCCTCGTGACTATTTTGAT
TCTCAACAAGCTAACGTAGTAAAAACCTTTGATGAGTCCCTAGCCGATAAGGAGAAAATAAGACGCAATTTGGGTTCTGA
GGAAGCCTATGACTCTTTGAGGGAGTCCATATCTAACATCAAAACTATGGGATTAAGGGATCCTCTATTGAGTCATAAGG
TTGCTTTTAAGGTCCTTACTGTATTGAATAAAAGCATCTCAAGCACAACTAAGGAGTGTGTCCTTGATATTTTACCCAAC
TCAACTAAGGAGAAACTACTAGATCATTGGGTTTGTAGTCAGGAATTACTGAGGCACTTTTGGTCTTCTTATCCAGTATC
AACACAAAGTCTTGTTAGTAAGGCTACAAGACTGAAAGACGCCATATCACAAATATATTCTAAACTTGAGGAAATAAAGG
TATCTGCACAGTCGAACCTACGGGACCAGGTTTCCCTTGTTGTCGATCCAATGCAGCAGGCTCTGGATGCTGCTTTGTTA
CATTACGATGCTGACATTCGGAGAAGAAATGATAAAGGGTCGAAGCCTAATGGTTATGTTTAG

ORF - retro_mtru_41 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.32 %
Parental protein coverage: 79.86 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSSSVQQVVKRAKYKSTVKDPGTPGVIKLTRQKVVFKPNDPTSNNKLDVDFRLIKSQKNTKEGSTKPPWL
MSSSVQQVVKRAKYKSTVKDPGTPGVIKLTR.K.VFKPNDPTSNNKLDVDFRLIKSQKNTKEGS.K..WL
RetrocopyMSSSVQQVVKRAKYKSTVKDPGTPGVIKLTRPKLVFKPNDPTSNNKLDVDFRLIKSQKNTKEGSNKQTWL
ParentalNLVHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLRMKLLGEDSKLKKIHMEL
.L.HSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLR.KLLGEDSKLKKIH.EL
RetrocopyKLLHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLRIKLLGEDSKLKKIHKEL
ParentalVMSDKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTKPT-SDGRINQVKFQLTPEIKYQIFALKP
VMSDKLTESEFWATKKKLLDQDESRKL.QRIGFKN.LIFDTKPT.SDGRIN.VKFQLT.EIKYQIFALKP
RetrocopyVMSDKLTESEFWATKKKLLDQDESRKLTQRIGFKNCLIFDTKPTTSDGRINIVKFQLTREIKYQIFALKP
ParentalAVHQAFLNFVPSKMSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVD
A.HQAFLNFVPS.MSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEIL.NEARKKVRR.D
RetrocopyAIHQAFLNFVPSNMSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEILKNEARKKVRRID
ParentalPTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTAVE
PTLDMEADQGDDYTHLPDHGIFRDG.KETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRT.VE
RetrocopyPTLDMEADQGDDYTHLPDHGIFRDGCKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTEVE
ParentalALARRKHESDGVVEERRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLSGKEKI
.LARRKHESDGVVEERRNRISK.AQIEDLQAQD.HPF.PLCIKDPRDYFDSQQAN.VKT.D.SL..KEKI
RetrocopyVLARRKHESDGVVEERRNRISKTAQIEDLQAQDNHPFVPLCIKDPRDYFDSQQANVVKTFDESLADKEKI
ParentalRCNLGSEEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISST
R.NLGSEEAY.SLRESISNIKTMGLRDPLLSH.VAFKVL..L.K.ISST
RetrocopyRRNLGSEEAYDSLRESISNIKTMGLRDPLLSHKVAFKVLTVLNKSISST

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_41 was not experimentally validated.

Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Medicago truncatula MTR_1g090110 1 retrocopy
retro_mtru_41 ,



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