>retro_mtru_41
ATGTCTTCGTCGGTGCAACAAGTTGTCAAGCGTGCCAAATATAAATCCACCGTGAAAGATCCTGGTACTCCTGGTGTTAT
CAAATTGACTCGACCGAAACTTGTTTTCAAGCCTAATGATCCAACATCAAACAACAAGCTTGACGTTGATTTCAGATTAA
TCAAAAGTCAAAAAAACACCAAAGAGGGGTCAAACAAACAAACGTGGCTTAAGCTTTTACATTCTCAAGGCAGTTACATC
TTTGAGTTTGAAAGCTTTTCGGATCTTCATGTTTGCCGGGAATTCGCTGCTGGTATTATTAGCAAGCCTGTAGAAGCTCC
AAAAGTTGTTTCAGATGAACAACTTAGCACTGCTGAAATGACACTGAGGATAAAGCTATTGGGAGAAGATAGTAAATTGA
AGAAGATTCATAAGGAACTTGTGATGAGTGATAAGCTTACAGAATCAGAATTTTGGGCTACAAAGAAGAAATTGCTCGAC
CAAGATGAAAGCCGAAAGTTAACACAAAGGATTGGATTTAAAAATTGTTTGATCTTCGACACAAAGCCTACTACTAGTGA
CGGTCGGATAAATATAGTTAAATTTCAATTGACTCGAGAAATAAAATATCAGATTTTTGCTCTCAAACCAGCAATTCACC
AGGCATTCCTCAATTTTGTACCGAGTAACATGAGCGAGGTAGATTTCTGGAACAAATACTTCAAAGCTGAATATCTCCAT
AGTACCAAAAATGCTATTGCAGCAGCTGCTGAGGCTGCTGAAGATGAGGATCTTGCTGTTTTTTTGAAAGATGACGAGAT
ATTAAAAAATGAAGCTCGAAAGAAGGTTCGACGGATTGATCCAACTTTAGACATGGAAGCAGACCAAGGAGATGATTACA
CTCATCTTCCTGACCACGGGATCTTCCGTGATGGTTGCAAGGAAACATCTGAAGCTCAAAATACTCTTTATCGAAGAACG
TTGTTGCAAGATCTCAACAGACAAAGTGAGGTGGTTCTTGAAGGAAAAACTTTAGATATAGATATGGAACATCCAAGAAC
AGAAGTAGAAGTGCTTGCTCGGAGAAAACATGAATCTGATGGGGTTGTGGAGGAGAGGCGAAACAGAATTTCTAAGACAG
CCCAGATTGAAGATCTTCAGGCACAAGATAATCATCCATTTGTACCACTTTGTATCAAGGATCCTCGTGACTATTTTGAT
TCTCAACAAGCTAACGTAGTAAAAACCTTTGATGAGTCCCTAGCCGATAAGGAGAAAATAAGACGCAATTTGGGTTCTGA
GGAAGCCTATGACTCTTTGAGGGAGTCCATATCTAACATCAAAACTATGGGATTAAGGGATCCTCTATTGAGTCATAAGG
TTGCTTTTAAGGTCCTTACTGTATTGAATAAAAGCATCTCAAGCACAACTAAGGAGTGTGTCCTTGATATTTTACCCAAC
TCAACTAAGGAGAAACTACTAGATCATTGGGTTTGTAGTCAGGAATTACTGAGGCACTTTTGGTCTTCTTATCCAGTATC
AACACAAAGTCTTGTTAGTAAGGCTACAAGACTGAAAGACGCCATATCACAAATATATTCTAAACTTGAGGAAATAAAGG
TATCTGCACAGTCGAACCTACGGGACCAGGTTTCCCTTGTTGTCGATCCAATGCAGCAGGCTCTGGATGCTGCTTTGTTA
CATTACGATGCTGACATTCGGAGAAGAAATGATAAAGGGTCGAAGCCTAATGGTTATGTTTAG
ORF - retro_mtru_41 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.32 % |
Parental protein coverage: |
79.86 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSSSVQQVVKRAKYKSTVKDPGTPGVIKLTRQKVVFKPNDPTSNNKLDVDFRLIKSQKNTKEGSTKPPWL |
| MSSSVQQVVKRAKYKSTVKDPGTPGVIKLTR.K.VFKPNDPTSNNKLDVDFRLIKSQKNTKEGS.K..WL |
Retrocopy | MSSSVQQVVKRAKYKSTVKDPGTPGVIKLTRPKLVFKPNDPTSNNKLDVDFRLIKSQKNTKEGSNKQTWL |
|
Parental | NLVHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLRMKLLGEDSKLKKIHMEL |
| .L.HSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLR.KLLGEDSKLKKIH.EL |
Retrocopy | KLLHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLRIKLLGEDSKLKKIHKEL |
|
Parental | VMSDKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTKPT-SDGRINQVKFQLTPEIKYQIFALKP |
| VMSDKLTESEFWATKKKLLDQDESRKL.QRIGFKN.LIFDTKPT.SDGRIN.VKFQLT.EIKYQIFALKP |
Retrocopy | VMSDKLTESEFWATKKKLLDQDESRKLTQRIGFKNCLIFDTKPTTSDGRINIVKFQLTREIKYQIFALKP |
|
Parental | AVHQAFLNFVPSKMSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVD |
| A.HQAFLNFVPS.MSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEIL.NEARKKVRR.D |
Retrocopy | AIHQAFLNFVPSNMSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEILKNEARKKVRRID |
|
Parental | PTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTAVE |
| PTLDMEADQGDDYTHLPDHGIFRDG.KETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRT.VE |
Retrocopy | PTLDMEADQGDDYTHLPDHGIFRDGCKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTEVE |
|
Parental | ALARRKHESDGVVEERRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLSGKEKI |
| .LARRKHESDGVVEERRNRISK.AQIEDLQAQD.HPF.PLCIKDPRDYFDSQQAN.VKT.D.SL..KEKI |
Retrocopy | VLARRKHESDGVVEERRNRISKTAQIEDLQAQDNHPFVPLCIKDPRDYFDSQQANVVKTFDESLADKEKI |
|
Parental | RCNLGSEEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISST |
| R.NLGSEEAY.SLRESISNIKTMGLRDPLLSH.VAFKVL..L.K.ISST |
Retrocopy | RRNLGSEEAYDSLRESISNIKTMGLRDPLLSHKVAFKVLTVLNKSISST |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_41 was not experimentally validated.
Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.