Common name: Barrel medic
Latin name: Medicago truncatula
Genome assembly: GCA_000219495.2
All retrocopies: 65
Parental genes: 56

Summary: Number of retrocopies :
Conserved ORF: 51 ORF 14 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_mtru_1 64.76 % 97.52 % ORF
2. retro_mtru_2 88.12 % 95.81 % ORF
3. retro_mtru_3 92.65 % 100.00 % ORF
4. retro_mtru_4 52.40 % 91.64 % ORF
5. retro_mtru_5 76.39 % 80.79 % ORF
6. retro_mtru_6 97.27 % 100.00 % ORF
7. retro_mtru_7 59.82 % 100.00 % ORF
8. retro_mtru_8 81.82 % 100.00 % ORF
9. retro_mtru_9 81.77 % 92.65 % ORF
10. retro_mtru_10 90.91 % 89.67 % ORF
11. retro_mtru_11 72.40 % 96.46 % ORF
12. retro_mtru_12 82.57 % 100.00 % ORF
13. retro_mtru_13 54.42 % 73.48 % ORF
14. retro_mtru_14 75.56 % 73.80 % ORF
15. retro_mtru_15 68.98 % 76.25 % ORF
16. retro_mtru_16 56.06 % 80.08 % ORF
17. retro_mtru_17 65.23 % 84.57 % ORF
18. retro_mtru_18 72.62 % 57.31 % ORF
19. retro_mtru_19 68.42 % 98.36 % ORF
20. retro_mtru_20 55.30 % 99.77 % ORF
21. retro_mtru_21 96.55 % 100.00 % ORF
22. retro_mtru_22 75.91 % 82.60 % ORF
23. retro_mtru_23 79.10 % 100.00 % ORF
24. retro_mtru_24 90.46 % 98.92 % ORF
25. retro_mtru_25 52.06 % 93.70 % ORF
26. retro_mtru_26 79.39 % 72.84 % ORF
27. retro_mtru_27 88.33 % 99.17 % ORF
28. retro_mtru_28 89.04 % 95.90 % ORF
29. retro_mtru_29 57.14 % 97.06 % ORF
30. retro_mtru_30 66.67 % 69.47 % ORF
31. retro_mtru_31 100.00 % 100.00 % ORF
32. retro_mtru_32 93.70 % 75.02 % ORF
33. retro_mtru_33 94.35 % 100.00 % ORF
34. retro_mtru_34 85.04 % 100.00 % ORF
35. retro_mtru_35 92.86 % 100.00 % ORF
36. retro_mtru_36 76.69 % 88.06 % ORF
37. retro_mtru_37 77.08 % 70.77 % ORF
38. retro_mtru_38 83.96 % 64.83 % ORF
39. retro_mtru_39 96.24 % 84.71 % ORF
40. retro_mtru_40 98.50 % 100.00 % ORF
41. retro_mtru_41 92.32 % 79.86 % ORF
42. retro_mtru_42 100.00 % 100.00 % ORF
43. retro_mtru_43 81.09 % 53.33 % ORF
44. retro_mtru_44 84.46 % 86.55 % ORF
45. retro_mtru_45 58.18 % 75.54 % ORF
46. retro_mtru_46 95.39 % 100.00 % ORF
47. retro_mtru_47 82.82 % 98.79 % ORF
48. retro_mtru_49 86.92 % 98.47 % ORF
49. retro_mtru_51 93.46 % 53.14 % ORF
50. retro_mtru_52 54.61 % 58.16 % ORF
51. retro_mtru_54 83.75 % 64.00 % ORF
52. retro_mtru_55 53.68 % 75.40 % ORF
53. retro_mtru_58 76.74 % 73.71 % ORF
54. retro_mtru_59 83.76 % 100.00 % ORF
55. retro_mtru_63 61.54 % 52.89 % ORF
56. retro_mtru_67 77.24 % 92.42 % ORF
57. retro_mtru_69 79.67 % 92.42 % ORF
58. retro_mtru_73 60.00 % 52.89 % ORF
59. retro_mtru_74 60.00 % 52.89 % ORF
60. retro_mtru_75 60.00 % 52.89 % ORF
61. retro_mtru_80 85.37 % 57.86 % ORF
62. retro_mtru_84 60.00 % 52.89 % ORF
63. retro_mtru_85 61.54 % 52.89 % ORF
64. retro_mtru_86 61.89 % 97.37 % ORF
65. retro_mtru_87 61.35 % 97.37 % ORF
# Ensembl ID Symbol Description
1. MTR_8g468080 hypothetical protein
2. MTR_4g103300 cytidine/deoxycytidylate deaminase family protein
3. MTR_7g091230 transcription initiation factor IIB
4. MTR_7g099040 Zn-dependent alcohol dehydrogenase family, class III protein
5. MTR_5g089130 hypothetical protein
6. MTR_4g125510 mediator of RNA polymerase II transcription subunit 20b
7. MTR_2g008180 60S ribosomal protein L36a
8. MTR_1g097600 Ran-binding protein 2, Ran-binding domain protein
9. MTR_1g090110 TFIIH basal transcription factor complex subunit, putative
10. MTR_3g070000 triose-phosphate transporter family protein
11. MTR_2g085330 proton pump interactor, putative
12. MTR_4g007570 putative GRP family
13. MTR_1g103100 40S ribosomal protein S3a-1
14. MTR_2g461970 alpha-1,4-glucan-protein synthase [UDP-forming]-like protein
15. MTR_8g024350 60S acidic ribosomal protein
16. MTR_2g021040 structural constituent of ribosome protein, putative
17. MTR_3g092600 60S acidic ribosomal protein
18. MTR_8g074350 Chitinase (Class Ib) / Hevein
19. MTR_4g056100 UDP-D-apiose/UDP-D-xylose synthase
20. MTR_1g023630 core histone H2A/H2B/H3/H4
21. MTR_1g115545 60S ribosomal L35-like protein
22. MTR_7g102930 hypothetical protein
23. MTR_4g097170 core histone H2A/H2B/H3/H4
24. MTR_8g085470 gibberellin-regulated family protein
25. MTR_7g107440 sister-chromatide cohesion protein
26. MTR_4g066700 transmembrane protein, putative
27. MTR_3g091700 RWP-RK domain protein
28. MTR_2g103490 lactoylglutathione lyase/glyoxalase I family protein
29. MTR_3g094860 60S ribosomal L6-like protein
30. MTR_0007s0410 hypothetical protein
31. MTR_2g084475 RING/U-box protein, putative
32. MTR_7g053180 60S ribosomal protein L32-1
33. MTR_2g098440 Pre-mRNA-splicing factor ATP-dependent RNA helicase
34. MTR_2g022700 glucose-6-phosphate/phosphate translocator-like protein
35. MTR_7g112430 protein phosphatase 2C family protein
36. MTR_5g079570 major intrinsic protein (MIP) family transporter
37. MTR_2g084715 splicing factor U2af small subunit A-like protein
38. MTR_2g084220 multiprotein bridging factor 1b-like protein
39. MTR_4g008170 calcium-transporting ATPase 8, plasma membrane-type protein
40. MTR_2g436620 translationally-controlled tumor-like protein
41. MTR_3g100960 processing peptidase
42. MTR_0009s0370 sugar porter (SP) family MFS transporter
43. MTR_2g070740 coiled-coil protein
44. MTR_8g039540 aspartic proteinase nepenthesin-like protein
45. MTR_5g015370 ADP-ribosylation factor-like protein A1D
46. MTR_7g098290 60S ribosomal L23-like protein
47. MTR_3g434840 pre-mRNA-splicing factor cwc22, putative
48. MTR_2g049790 CBL-interacting kinase
49. MTR_7g085070 major intrinsic protein (MIP) family transporter
50. MTR_7g096040 histone acetyltransferase GCN5
51. MTR_8g028870 hypothetical protein
52. MTR_4g037105 purple acid phosphatase superfamily protein
53. MTR_7g021030 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
54. MTR_1g070450 40S ribosomal protein S15-4
55. MTR_3g067585 calcium-dependent lipid-binding (CaLB domain) family protein
56. MTR_3g100710 carboxy-terminal domain cyclin
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)