RetrogeneDB ID:

retro_nleu_1095

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397281.1:20827832..20828267(+)
Located in intron of:ENSNLEG00000010004
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C11ORF73
Ensembl ID:ENSNLEG00000016224
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1095
GGCTCTGTCTACTTTTCCTATCCTGATTCAAATGGGATGCCAGTATGACAACTCCTATGATTTGTCATGAATGGGAAACC
AAGTGCCATCTTCAAAATTTCAGGTCTTAAATCTGGAGGAGGAAGCCAATATCCCTTTGGAGCCATGAATATTGTCCAAA
CTCCATCTGTTGCTCAGATGGGAATTTCGGTGGAATCACTGGACAGTATGGCTCACCAGACTCCTGTAGGTAATGCTGTA
TCCTCAGTTGACTCATTCACTCTGTTCACACAAAAGATGTTGGACAACTTATACAATTTTGCTTCATCGTTCGCTGTCTC
TCAGGCCCAGATGACACCAAGCCTATATGAAATGTTCATTCTGCAAAGTGTGTTTCTGAAATGGTATGAAAACTTTCAAA
GATGACTACCACAGAACCCTCTCTTTTGGAAAACA

ORF - retro_nleu_1095 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.3 %
Parental protein coverage: 74.11 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGSVYFSYPDSNGMPVWQLLGFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDSM
GSVYFSYPDSNGMPV.QLL.FV.NGKPSAIFKISGLKSG.GSQ.PFGAMNIV.TPSVAQ.GISVE.LDSM
RetrocopyGSVYFSYPDSNGMPV*QLL*FVMNGKPSAIFKISGLKSGGGSQYPFGAMNIVQTPSVAQMGISVESLDSM
ParentalAQQTPVGNAAVSSVDSFTQFTQKMLDNFYNFASSFAVSQAQMTPSPSEMFIPANVVLKWYENFQRRLAQN
A.QTPVGN.AVSSVDSFT.FTQKMLDN.YNFASSFAVSQAQMTPS..EMFI...V.LKWYENFQR.L.QN
RetrocopyAHQTPVGN-AVSSVDSFTLFTQKMLDNLYNFASSFAVSQAQMTPSLYEMFILQSVFLKWYENFQR*LPQN
ParentalPLFWKT
PLFWKT
RetrocopyPLFWKT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1095 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Equus caballus ENSECAG000000156051 retrocopy
Homo sapiens ENSG000001491961 retrocopy
Gorilla gorilla ENSGGOG000000231681 retrocopy
Myotis lucifugus ENSMLUG000000162601 retrocopy
Mus musculus ENSMUSG000000627971 retrocopy
Nomascus leucogenys ENSNLEG00000016224 1 retrocopy
retro_nleu_1095 ,
Oryctolagus cuniculus ENSOCUG000000131082 retrocopies
Pongo abelii ENSPPYG000000037461 retrocopy
Pan troglodytes ENSPTRG000000041441 retrocopy
Tupaia belangeri ENSTBEG000000091922 retrocopies
Tursiops truncatus ENSTTRG000000122671 retrocopy



Copyright © RetrogeneDB 2014-2017