RetrogeneDB ID: retro_nleu_1110

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397281.1:22633180..22634004(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL1
• Ensembl ID: ENSNLEG00000017183
• Aliases: None
• Description: None

Sequence

>retro_nleu_1110
ATGACAGCTGAGACTTGGAACGTGGCCGGAGCAGAGGCCCCGCAGCCCCCGAAGCACTACTACCGGCGACATGCTCACTC
CAACCCCATGGCAGACCACACACTGTGCTATCCTGGGAAGCCAGAGGAGATGGACTGGTCTGAGCTAGACCCAGAGTTCT
TCGTTCCACTCGCTCAAAATCAGAGCCACGATGACCCAAAGGATAAGAAAGAAAAGAGAGCTCAGGCCCAAGTGGAGTCT
GCAGACATAGGCTGTGGCTATGGTGGCCTGTTAGTGGAACTATCACCACTGTTCCCAGACACACTGATTCTGGGTCTGGA
GATCCAGGTGAAGGTCTCAGACTACGTACAAGACCAGATTTGGGCCCTACGCACAGCTCCTGGAGGCGGCTTCCAGAACA
TTGCCTGTCTCTGTAGCAATGCCATGAAGCACCTTCCTAACTTCTACAAGGCCAGCTGACAAAGACGTTCTTCCTCTTCC
CCGACCCACATTTCAAGCAGACAAAGTACAAGTGGCAAATCATCAGTCCCACTCTGCTAGCAAAATATGCCTATGTGCTG
AGAGTTGGGGGGCTGGTATGTACCATAACCCATGTGCTGGAGCTACACGACTGGATATGCACCCATTTTGAAGAGCACCC
GCTGTTTGAGCGTATGCCTCTGGAGGACCTGAGTGAAGACCCCATTGTGGGACATCTAGGTACCTCAACTGAGGAGGGGA
AGAAAATTCTACGTAATGGAGGGAAGAATTTCCCAGCCATCTTTCAAAGAATACAAGATCCCATCCTCCAGGCAGTGACC
CCCCAAACCAGCCTGCCTGGTCAC

Alignment

ORF - retro_nleu_1110 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.36 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAAETWSVAGAEAPTPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPAFFAPLTQNQSHDDPKDKK
          M.AETW.VAGAEAP.P.K.YYR..AHSNPMADHTL.YP.KPEEMDWSEL.P.FF.PL.QNQSHDDPKDKK
Retrocopy MTAETWNVAGAEAPQPPKHYYRRHAHSNPMADHTLCYPGKPEEMDWSELDPEFFVPLAQNQSHDDPKDKK

Parental  EKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSN
          EKRAQAQVE.ADIGCGYGGLLVELSPLFPDTLILGLEI.VKVSDYVQD.I.ALR.AP.GGFQNIACL.SN
Retrocopy EKRAQAQVESADIGCGYGGLLVELSPLFPDTLILGLEIQVKVSDYVQDQIWALRTAPGGGFQNIACLCSN

Parental  AMKHLPNFFYK-GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCT
          AMKHLPN.FYK.GQLTK.FFLFPDPHFK.TK.KW.IISPTLLA.YAYVLRVGGLV.TIT.VLELHDW.CT
Retrocopy AMKHLPN-FYK<GQLTKTFFLFPDPHFKQTKYKWQIISPTLLAKYAYVLRVGGLVCTITHVLELHDWICT

Parental  HFEKHPLFERVPLEDLSEDPIVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQAVTPQTSLPGH
          HFE.HPLFER.PLEDLSEDPIVGHLGTSTEEGKK.LRNGGKNFPAIF.RIQDP.LQAVTPQTSLPGH
Retrocopy HFEEHPLFERMPLEDLSEDPIVGHLGTSTEEGKKILRNGGKNFPAIFQRIQDPILQAVTPQTSLPGH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1110 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006615	1 retrocopy	retro_cjac_2888,
Homo sapiens	ENSG00000037897	1 retrocopy	retro_hsap_4796,
Gorilla gorilla	ENSGGOG00000001411	1 retrocopy	retro_ggor_2985,
Microcebus murinus	ENSMICG00000003803	1 retrocopy	retro_mmur_345,
Macaca mulatta	ENSMMUG00000022148	1 retrocopy	retro_mmul_2556,
Nomascus leucogenys	ENSNLEG00000017183	1 retrocopy	retro_nleu_1110 ,
Pongo abelii	ENSPPYG00000004706	1 retrocopy	retro_pabe_3730,
Tupaia belangeri	ENSTBEG00000011522	1 retrocopy	retro_tbel_3245,