RetrogeneDB ID:

retro_nleu_2252

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397338.1:7277592..7280538(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PKN2
Ensembl ID:ENSNLEG00000010197
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2252
ATGGCGTCCAACCCCGAACGGGGGTTGATTCTGCTCACGGAACTGCAGGGGGACTCCCGAAGTCTTCCATTTTCTGAGAA
TGTGAGTGCTGTTCAAAAAGTAGACTTTTCAGATACAATGGTGCAGCAGAAATTGGATGATATCAAGGATCGAATTAAGA
GAGAAATAAGGAAAGAACTGAAAATCAAAGAAGGAGCTGAAAATCTGAGGAAAGTCACAACAGATAAAAAAAGCTTGGCT
TATGTAGACAACATTTTGAAAAAATCAAATAAAAAATTAGAAGAACTACATCACAAGCTGCAGGAATTAAATGCATATAT
TGTTGTATCAGATCCAGAAGATATTACAGATTGTCCGAGGATTCCAGCTACTCCAAACAGTGACCCTCATTTTTCTACTA
GCAACAATAGATTGAAGGCTCTACAAAAACAGTTGGATATAGAACTTAAAGTAAAACAAGGTGCAGAGAATATGATACAG
ATGTATTCAAATGGATGTTCAAAGGATCGGAAACTCCGTGGTACAGCTCAGCAACTGCTCCAGGACAGCAAGACAAAAAT
AGAAGTCCTACGAATGCAGATTCTTCAGGCAGTCCGGACTAATGAATTGGCTTTTGATAATGCAAAACCTGTGATAAGTC
CTCTTGAACTTCGGATGGAAGAATTAAGGCATCATTTTAGGATCGAGTTTGCAGTAGCAGAAGGTGCAAAGAATGTAATG
AAATTACTTGGCTCAGGAAAAGTAACAGACAGAAAAGCACTTTCAGAAGCTCAAGCAAGATTTAATGAATCAAGTCAGAA
GTTGGACCTTTTAAAGTATTCATTAGAGCAAAGATTAACTGAACTCCCCAAGAATCATCCCAAAAGCAGTGTTACTATTG
AAGAACTTGCACTTGTTGCCGCATCACCAACACTAAGTCCAGGTCAAAGGATGATATCTACACAGAATCAATATAGTACA
CCATCCAAACCAGCAGCATTAACAGGGACTTTGGAAGTGCGTCTTATCGGCTGCCAAGATATCCTAGAGAATGTCCCTGG
ACGGTCAAAAGCAACATCAGTTGCGCTGCCTGGTTGGAGTCCAAGTGAAACCAGATTATGTTGCATGAGCAGAAGGAGTA
AAAGCAGAAGTAGTGGAAATCTTCTAAAAACCCATGACTTGTCCAGTGATGTCTGTGCTGTTTTGAAGCTCGATAATACT
GTGGTTGGCCAAACTAGCTGGAAACCCATTTCCAATCAGTCATGGGACCAGAAGTTTACACTGGAACTGGACAGGTCACG
TGAACTAGAAATTTCCGTTTATTGGCGTGATTGGCGGTCTCTCTGTGCTGTAAAATTTCTGAGGTTAGAAGATTTTTTAG
ACAACCAACGGCATGGCATGTGTCTCTGTTTGGAACCACAGGGTACTTTATTTGCAGAGGTTACCTTTTTTAATCCAGTT
ATTGAAAGAAGACCAAAACTTCAAAAACAAAAGAAATTTTTTTCAAAGCAACAAGGCAAAAGATTTCTCAGAGTTCCTCA
AATGAATATTAATATTGCCACTTGGGGAAGGCCAGTAAGAAGAGTTAGTCCTACAGTAAATCACTCTGGCACCTTCAGCC
CTCAAGCTCCTGTGCCCACTACAGTGCCAGTGGTTGAAGTACACATCCCTAAACGAGCACCTCCAGCTAGTGATTCTACA
GTAACCAAACTGGACTTTGATCTTGAGCCTGAACCTCCTCCAGCCCCACCACGAGCTTCTTCCCTTGGAGAAATAGATGA
ATCTTCCGAATTAAGAGTTTTGGATACACCAGGACAGGATTCAGAGACTGCTTTTGATACTGAGAATGACAGAAATAGTA
TACTTCCAAAATCTCAATCTGAATACAAGCCTGATACTCCTCAGTCAGGCCTAGAATATAGCGGTATTCAAGAACTTGAG
GATAGAAGCTGTCAGCAAAGGTTTCAGTGTAATCTACAAGATTTCAGGTGTTATGCTGTCTTGGGAAGAGGAAATTTTGG
AAAGGTGCTTTTAGCTGAATATAAACACACCAATGAGATGTTTGCTATAAAAGCCTTAAAGAAAGGAGATATTGTGGCTC
GACATGAAGTAGACAGCCTGATGTGTGAAAAAAGAATTTTTGAAACTGTGAATAGTGTAAGGCATCCCTTTTTGGTGAAC
CTTTTTGCATGTTTCCAAACCAAAGAGCATGTTTGCTTTGTAATGGAATATGCTGCCGGTGGGGACTTATTGATGCACGT
TAATACTGGTGTCTTTTCTGAACCAAGAGCTGTATTTTATGCTGCTTGTATAGTTCTTGGGTTGCAGTATTTACATGAAC
ACAAAATTGCTCATAGAGATTTGAAATTGGAAAACTTATTGCTAGATACAGAGGGCTTTGTGAAAATTGCTGATTTTGGT
CTTTGCAAACAAGGAATGGGATATGGAGATAGAACAAGCACATTTTGTGGCAATGCTGAATGTCTTGCCCCAGAAGTATT
AACAGAAACTTCTTATACAAGGGCTGTAGATTGGTGGGGCCTTGGCGTGCTTATATATGAAATGCTTGTTGGTAAGCCTC
CCTTTCATGGTGATGATGGAGAGAAAGTTTTTGACAGTATTGTAAATGATGAAGTAAGGTATCCAAAGTCCTTATCTACA
GAAGCCACTTCTATAATGAGAAGGCTGTTAAGAAGAAATCCTGAGTTGCGCCTTGGGGCTAGCGAGAAAGATGCAGAAGA
TGTAAAAAAGCACCCATTTTTCCGGCTAATTTATTGGCGCGCTCTGATGGACAAAAAAGTAAAGCCACCATTTATACCTA
CCATAAAAGGACGAGAAGATGTTAGTAATTTTTCTGATGAATTTACCTCAAAAGCACCTATTCTGACTCCACCTCAAGAA
CCAAGGATACTTTCGGAAGAGGAGCAGGAAATGTTCAGAGATTTTGACTACACTGCGGATTGGTGT

ORF - retro_nleu_2252 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.35 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMASNPERGLILLTELQGDSRSLPFSENVSAVQKLDFSDTMVQQKLDDIKDRIKREIRKELKIKEGAENLR
MASNPERGLILLTELQGDSRSLPFSENVSAVQK.DFSDTMVQQKLDDIKDRIKREIRKELKIKEGAENLR
RetrocopyMASNPERGLILLTELQGDSRSLPFSENVSAVQKVDFSDTMVQQKLDDIKDRIKREIRKELKIKEGAENLR
ParentalKVTTDKKSLAYVDNILKKSNKKLEELHHKLQELNAHIVVSDPEDITDCPRTPDTPNSDPRCSTSNSRLKA
KVTTDKKSLAYVDNIL.......EELHHKLQELNA.IVVSDPEDITDCPR.P.TPNSDP..STSN.RLKA
RetrocopyKVTTDKKSLAYVDNILXXXXXXXEELHHKLQELNAYIVVSDPEDITDCPRIPATPNSDPHFSTSNNRLKA
ParentalLQKQLDIELKVKQGAENMIQMYSNGSSKDRKLHGTAQQLLQDSKTKIEVIRMQILQAVQTNELAFDNAKP
LQKQLDIELKVKQGAENMIQMYSNG.SKDRKL.GTAQQLLQDSKTKIEV.RMQILQAV.TNELAFDNAKP
RetrocopyLQKQLDIELKVKQGAENMIQMYSNGCSKDRKLRGTAQQLLQDSKTKIEVLRMQILQAVRTNELAFDNAKP
ParentalVISPLELRMEELRHHFRIEFAVAEGAKNVMKLLGSGKVTDRKALSEAQARFNESSQKLDLLKYSLEQRLN
VISPLELRMEELRHHFRIEFAVAEGAKNVMKLLGSGKVTDRKALSEAQARFNESSQKLDLLKYSLEQRL.
RetrocopyVISPLELRMEELRHHFRIEFAVAEGAKNVMKLLGSGKVTDRKALSEAQARFNESSQKLDLLKYSLEQRLT
ParentalELPKNHPKSSIIIEELSLVAASPTLSPRQSMISTQNQYSTLSKPAALTGILEVRLMGCQDILENVPGRSK
ELPKNHPKSS..IEEL.LVAASPTLSP.Q.MISTQNQYST.SKPAALTG.LEVRL.GCQDILENVPGRSK
RetrocopyELPKNHPKSSVTIEELALVAASPTLSPGQRMISTQNQYSTPSKPAALTGTLEVRLIGCQDILENVPGRSK
ParentalATSVALPGWSPSETRSSFMSRTSKSKSGSSRNLLKTDDLSNDVCAVLKLDNTVVGQTSWKPISNQSWDQK
ATSVALPGWSPSETR...MSR.SKS.S..S.NLLKT.DLS.DVCAVLKLDNTVVGQTSWKPISNQSWDQK
RetrocopyATSVALPGWSPSETRLCCMSRRSKSRS--SGNLLKTHDLSSDVCAVLKLDNTVVGQTSWKPISNQSWDQK
ParentalFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLFAEVTFFNPVIERRPKLQ
FTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCL.LEPQGTLFAEVTFFNPVIERRPKLQ
RetrocopyFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLCLEPQGTLFAEVTFFNPVIERRPKLQ
ParentalRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGTFSPQAPVPTTVPVVDVRIPELAPPASD
.QKK.FSKQQGK.FLR.PQMNINIATWGR.VRR..PTVNHSGTFSPQAPVPTTVPVV.V.IP..APPASD
RetrocopyKQKKFFSKQQGKRFLRVPQMNINIATWGRPVRRVSPTVNHSGTFSPQAPVPTTVPVVEVHIPKRAPPASD
ParentalSTVTKLDFDLEPEPPPAPPRVSSLGEIDESSELRLLDAHDGDSETAFDIENDRNSILPKSQSEYKPDTPQ
STVTKLDFDLEPEPPPAPPR.SSLGEIDESSELR.LD....DSETAFD.ENDRNSILPKSQSEYKPDTPQ
RetrocopySTVTKLDFDLEPEPPPAPPRASSLGEIDESSELRVLDTPGQDSETAFDTENDRNSILPKSQSEYKPDTPQ
ParentalSGLEYSGIQELEDRSSQQRFQFNLQDFRCCAVLGRGHFGKVLLAEYKHTNEMFAIKALKKGDIVARDEVD
SGLEYSGIQELEDRS.QQRFQ.NLQDFRC.AVLGRG.FGKVLLAEYKHTNEMFAIKALKKGDIVAR.EVD
RetrocopySGLEYSGIQELEDRSCQQRFQCNLQDFRCYAVLGRGNFGKVLLAEYKHTNEMFAIKALKKGDIVARHEVD
ParentalSLMCEKRIFETVNSVRHPFLVNLFACFQTKEHVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGL
SLMCEKRIFETVNSVRHPFLVNLFACFQTKEHVCFVMEYAAGGDL.MH..T.VFSEPRAVFYAAC.VLGL
RetrocopySLMCEKRIFETVNSVRHPFLVNLFACFQTKEHVCFVMEYAAGGDLLMHVNTGVFSEPRAVFYAACIVLGL
ParentalQYLHEHKIAHRDLKLENLLLDTEGFVKIADFGLCKEGMGYRDRTSTFCGTPLYLAPEVITEISYTRAVDW
QYLHEHKIAHRDLKLENLLLDTEGFVKIADFGLCK.GMGY.DRTSTFCG....LAPEV.TE.SYTRAVDW
RetrocopyQYLHEHKIAHRDLKLENLLLDTEGFVKIADFGLCKQGMGYGDRTSTFCGNAECLAPEVLTETSYTRAVDW
ParentalWGLGVLIYQMLVGDYPFRGGDEEKLFDSIVNDEVRYPRFLSTEAISIMRRLLRRNPKRRLGASKKDAEDV
WGLGVLIY.MLVG..PF.G.D.EK.FDSIVNDEVRYP..LSTEA.SIMRRLLRRNP..RLGAS.KDAEDV
RetrocopyWGLGVLIYEMLVGKPPFHGDDGEKVFDSIVNDEVRYPKSLSTEATSIMRRLLRRNPELRLGASEKDAEDV
ParentalKKHPFFRLIDWSALMDKKVKPPFIPTIRGREDVSHFDDEFTSEAPILTPPRERRILSEEEQEMFRDFDYT
KKHPFFRLI.W.ALMDKKVKPPFIPTI.GREDVS.F.DEFTS.APILTPP.E.RILSEEEQEMFRDFDYT
RetrocopyKKHPFFRLIYWRALMDKKVKPPFIPTIKGREDVSNFSDEFTSKAPILTPPQEPRILSEEEQEMFRDFDYT
ParentalADWC
ADWC
RetrocopyADWC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Nomascus leucogenys was not studied using ChIP-Seq data.

EST - click to see more details

Nomascus leucogenys was not studied using EST data.

TSS - click to see more details

Nomascus leucogenys was not studied using FANTOM5 data.

Lab - click to see more details

retro_nleu_2252 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Nomascus leucogenys ENSNLEG00000010197 4 retrocopies
retro_nleu_1230, retro_nleu_2252 , retro_nleu_2861, retro_nleu_3074,


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