RetrogeneDB ID:

retro_nleu_2861

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397455.1:192367..194893(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000007830
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:PKN2
Ensembl ID:ENSNLEG00000010197
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2861
CTACAAAAACAGTTGGATATAGAACTTAAAGTAAAACAAGATGCAGAGAATATGATACAGATGTATTCAAATGGATCTTC
AAAGGATCAGAAACTCCATGGTATAGCTCAGCAACTGCTCCAGGACAGCAAGACAAAAATAGAAGTCATACCAATGCAGA
TTCTTCAGGCAGTCCAGACTAATGAATTGGCTTTTGATAATACAAAACCTGTGATAAGTCCTCTTGAACTTCGGATAGAA
GAATTAAGGCATCATTTTAGGATACAGTTTGCAATAGCAGAAGGTGCAAAGAATGTAATGAAATTACTTGGCTCAGGAAA
AGTAACAGACAGAAAAGCACTTTCAGAAGCTCAAGCAAGATTTAATGAATCAAGTCAGAAGTTGGACCTTTTAAATTATT
CATTAGAGCAAAGATTAAATGAACTCCCCAAGAATCATCCCAAAAGCAGTAGTATTATTGAAGAACTTTCACTTGTTGCC
GCATCACCAACACTAAGTCCAGGTCAAAGTATGATATCTACACAAAATCAATATAGTACACCATCCAAACCAGCAGCATT
AACAGGGACTTTGGAAGTGCGTCTTATCGGCTGCCAAGATATCCTAGAGAATGTCCCTGGACGGTCAAAAGCAACATCAG
TTGCACTGCCTGGTTGGAGTCCAAGTGAAACCAGATCATGTTTCATGAGCAAAACGAGTAAAAGTAAAAGCAGAAGTAGT
GGAAATCTTCTAAAAACCGATGACTTGTCCAATGATGTCTGTGCTGTTTTGAAGCTCGATAATACTGTGGTTGGCCAAAC
TAGCTGGAAACCTATTTCCAATCAGTCATGGGACCAGAAGTTTACACTGGAACTGGACAGGTCACATGAACTGGAAATTT
CAGTTTATTGGCGTGATTGGCGGTCTCTCTGTGCTGTAAAATTTCTGAGGTTAGAAGATTTTTTAGACAACCAACAGCAT
GGCATGTGTCTCTATTTGGAACCACAGGGTACTTTATTTGCAGAGGTTACCTTTTTTAATCCAGTTATTGAAAGAAGACC
AAAACTTCAAAAACAAAAGAAAATTTTTTCAAAGCAACAAGGCAAAAGATTTCTCAGAGTTCCTCAAATGAATATTATTA
TTGCCATTTGGAGAAGGCTAGTAAGAAGAGCTATTCCTACAGTAAATCATTCTGGCACCTTCAGCCCTCAAGCTCCTGTG
CCTACTACAGTGCCAGTGGTTGATGACATCCCTGAACTAACACCTCCAGCTAGTGATTCTACAGCAGTGAAACTGGACTT
TGATCTTGAGCCTGAACCTCCTCCAGCCCCACCACGAGCTTCTTCCCTTGGAGAAATAGATGAATCTTCTGAATTAAGAG
TTTTGGATACACCAGGACAGGATTCAGAGACTGCTTTTGATATTGAGAATGACAGAAATAATATACTTCCAAAATCTCAA
TCTGAATACAAGCCTGATACTCCTCAGTCAGGCCTAGAATATAGTGGTATTCAAGAACTTGAGGATAGATCTCAGCAAAG
GTTTCAGATTAATCTACAAGATTTCAGGTGTTATGCTGTCTTGGGAAGAGGACAATTTGGAAAGGTGCTTTTAGCTGAAT
ATAAACACACAAATGAGATGTTTGCTATAAAAGCCTTAAAGAAAGGAGATATTGTGGCTCGAGATGAAGTAGACATCCTG
ATGCGTGAAAAAAGAATTTTCGAAACTGTGAATAGTGTAAGGCATCCCTTTTTGATGAACCTTTTTGCATGTTTCCAAAC
CAAAGAGCATGTTTGCTTTGTAATGGAATATGCTGCTGGTGGGGACCTAACGATGCACGTTTGTACTGATGTCTTTTCTC
AACCAAGAGCTGTATTTTATGCTGCTTGTGTAGTTCTTGGGTTGCAGTATTTACATGAACACAAAATTGTTCATAGAGAT
TTGAAATTGGAAAACTTATTGCTAGATACAGAGGGCTTTGTGAAAATTGCTGATTTTGGTCTTTGCAAAGAAGGAATGGG
ATATGGAGATAGAACAAGCACATTCTGTGGCACTCCTCTATATCTTGCCCCAGAAGTATTAACAGAAACTTCTTATACAA
GGGCTGTAGATTGGTGGGCCCTTGGCATGCTTATATATGAAATGCTTGTTGGTGACTCTCCCTTTTTTGGTGTGGTTGAA
GAGAAAGTTTATGACAATATTGTAAATGGTGAAGTAAGGTATCCAAGGTTCTTATCTACAGTAGCCATTTCTATAATGAG
AAGTCTGTTAAGAAGAAATCCTGAGCAGCGCCTTGGGGCTACTGAGAAAGATGCAGAGGATGTAAAAGAGCACCCATTTT
TCTGGCTAATTGATTGGAGCGCTCTGATGGACAAAAAAGTAAAGCCACCATTTATACCTACCATAAGAGGACGAGAAGAT
GTTAGTCATTTCGATGATGAATTTACCTCAGAAGCACCTATTCTGACTCCACCTCGAGAACGAAGGATACTTTCGGAAGA
GGAGCAGGAAATGTTCAGAGATTTTGACTACACTGCTGATTGGTGT

ORF - retro_nleu_2861 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.47 %
Parental protein coverage: 85.77 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLQKQLDIELKVKQGAENMIQMYSNGSSKDRKLHGTAQQLLQDSKTKIEVIRMQILQAVQTNELAFDNAKP
LQKQLDIELKVKQ.AENMIQMYSNGSSKD.KLHG.AQQLLQDSKTKIEVI.MQILQAVQTNELAFDN.KP
RetrocopyLQKQLDIELKVKQDAENMIQMYSNGSSKDQKLHGIAQQLLQDSKTKIEVIPMQILQAVQTNELAFDNTKP
ParentalVISPLELRMEELRHHFRIEFAVAEGAKNVMKLLGSGKVTDRKALSEAQARFNESSQKLDLLKYSLEQRLN
VISPLELR.EELRHHFRI.FA.AEGAKNVMKLLGSGKVTDRKALSEAQARFNESSQKLDLL.YSLEQRLN
RetrocopyVISPLELRIEELRHHFRIQFAIAEGAKNVMKLLGSGKVTDRKALSEAQARFNESSQKLDLLNYSLEQRLN
ParentalELPKNHPKSSIIIEELSLVAASPTLSPRQSMISTQNQYSTLSKPAALTGILEVRLMGCQDILENVPGRSK
ELPKNHPKSS.IIEELSLVAASPTLSP.QSMISTQNQYST.SKPAALTG.LEVRL.GCQDILENVPGRSK
RetrocopyELPKNHPKSSSIIEELSLVAASPTLSPGQSMISTQNQYSTPSKPAALTGTLEVRLIGCQDILENVPGRSK
ParentalATSVALPGWSPSETRSSFMSRTSKSKSGSSRNLLKTDDLSNDVCAVLKLDNTVVGQTSWKPISNQSWDQK
ATSVALPGWSPSETRS.FMS.TSKSKS.SS.NLLKTDDLSNDVCAVLKLDNTVVGQTSWKPISNQSWDQK
RetrocopyATSVALPGWSPSETRSCFMSKTSKSKSRSSGNLLKTDDLSNDVCAVLKLDNTVVGQTSWKPISNQSWDQK
ParentalFTLELDRSRELEISVYWRDWRSLCAVKFLRLEDFLDNQRHGMCLYLEPQGTLFAEVTFFNPVIERRPKLQ
FTLELDRS.ELEISVYWRDWRSLCAVKFLRLEDFLDNQ.HGMCLYLEPQGTLFAEVTFFNPVIERRPKLQ
RetrocopyFTLELDRSHELEISVYWRDWRSLCAVKFLRLEDFLDNQQHGMCLYLEPQGTLFAEVTFFNPVIERRPKLQ
ParentalRQKKIFSKQQGKTFLRAPQMNINIATWGRLVRRAIPTVNHSGTFSPQAPVPTTVPVVDVRIPELAPPASD
.QKKIFSKQQGK.FLR.PQMNI.IA.W.RLVRRAIPTVNHSGTFSPQAPVPTTVPVVD..IPEL.PPASD
RetrocopyKQKKIFSKQQGKRFLRVPQMNIIIAIWRRLVRRAIPTVNHSGTFSPQAPVPTTVPVVD-DIPELTPPASD
ParentalSTVTKLDFDLEPEPPPAPPRVSSLGEIDESSELRLLDAHDGDSETAFDIENDRNSILPKSQSEYKPDTPQ
ST..KLDFDLEPEPPPAPPR.SSLGEIDESSELR.LD....DSETAFDIENDRN.ILPKSQSEYKPDTPQ
RetrocopySTAVKLDFDLEPEPPPAPPRASSLGEIDESSELRVLDTPGQDSETAFDIENDRNNILPKSQSEYKPDTPQ
ParentalSGLEYSGIQELEDRSSQQRFQFNLQDFRCCAVLGRGHFGKVLLAEYKHTNEMFAIKALKKGDIVARDEVD
SGLEYSGIQELEDR.SQQRFQ.NLQDFRC.AVLGRG.FGKVLLAEYKHTNEMFAIKALKKGDIVARDEVD
RetrocopySGLEYSGIQELEDR-SQQRFQINLQDFRCYAVLGRGQFGKVLLAEYKHTNEMFAIKALKKGDIVARDEVD
ParentalSLMCEKRIFETVNSVRHPFLVNLFACFQTKEHVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGL
.LM.EKRIFETVNSVRHPFL.NLFACFQTKEHVCFVMEYAAGGDL.MH..TDVFS.PRAVFYAACVVLGL
RetrocopyILMREKRIFETVNSVRHPFLMNLFACFQTKEHVCFVMEYAAGGDLTMHVCTDVFSQPRAVFYAACVVLGL
ParentalQYLHEHKIAHRDLKLENLLLDTEGFVKIADFGLCKEGMGYRDRTSTFCGTPLYLAPEVITEISYTRAVDW
QYLHEHKI.HRDLKLENLLLDTEGFVKIADFGLCKEGMGY.DRTSTFCGTPLYLAPEV.TE.SYTRAVDW
RetrocopyQYLHEHKIVHRDLKLENLLLDTEGFVKIADFGLCKEGMGYGDRTSTFCGTPLYLAPEVLTETSYTRAVDW
ParentalWGLGVLIYQMLVGDYPFRGGDEEKLFDSIVNDEVRYPRFLSTEAISIMRRLLRRNPKRRLGASKKDAEDV
W.LG.LIY.MLVGD.PF.G..EEK..D.IVN.EVRYPRFLST.AISIMR.LLRRNP..RLGA..KDAEDV
RetrocopyWALGMLIYEMLVGDSPFFGVVEEKVYDNIVNGEVRYPRFLSTVAISIMRSLLRRNPEQRLGATEKDAEDV
ParentalKKHPFFRLIDWSALMDKKVKPPFIPTIRGREDVSHFDDEFTSEAPILTPPRERRILSEEEQEMFRDFDYT
K.HPFF.LIDWSALMDKKVKPPFIPTIRGREDVSHFDDEFTSEAPILTPPRERRILSEEEQEMFRDFDYT
RetrocopyKEHPFFWLIDWSALMDKKVKPPFIPTIRGREDVSHFDDEFTSEAPILTPPRERRILSEEEQEMFRDFDYT
ParentalADWC
ADWC
RetrocopyADWC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Nomascus leucogenys was not studied using ChIP-Seq data.

EST - click to see more details

Nomascus leucogenys was not studied using EST data.

TSS - click to see more details

Nomascus leucogenys was not studied using FANTOM5 data.

Lab - click to see more details

retro_nleu_2861 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Nomascus leucogenys ENSNLEG00000010197 4 retrocopies
retro_nleu_1230, retro_nleu_2252, retro_nleu_2861 , retro_nleu_3074,


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