RetrogeneDB ID: | retro_nleu_2362 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397348.1:2689276..2690383(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SHC1 | ||
Ensembl ID: | ENSNLEG00000011515 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.86 % |
Parental protein coverage: | 80.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | CEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQ-IIANHHMQSISFAS |
C....GA.G.T.RRKPCS.PLSSILGRSNLKFAGM.IT.T.STSSLN.M.ADCK..I...H.MQSISFAS | |
Retrocopy | CARCQGA-GGTGRRKPCSHPLSSILGRSNLKFAGMIITVTISTSSLNVMVADCKH>ITNHH-MQSISFAS |
Parental | GGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQ-AFELRFKQYLRNPPKLVTPHDRMAGFD |
.GDPDTAEYV...AKDPVNQ.ACHILECP.GLAQDVIST.GQ.AF.L.FKQ.LR.PPKLVTP.DRM.GFD | |
Retrocopy | SGDPDTAEYVTNIAKDPVNQKACHILECPQGLAQDVISTTGQ<AFDLHFKQCLRKPPKLVTPYDRMTGFD |
Parental | GSAWDEEEEEPPDHQYYNDF-PGKEPPLGGVVDMRLREGATPGAARPTVPTAQTPSHLGATLPVGQPVGG |
G.AWDEEE.EPP.HQ.YNDF.PGK.PPL..VV.MRLREGA.PGAARPT.P.AQTPSHLGATLP.GQ.VGG | |
Retrocopy | GLAWDEEEGEPPGHQHYNDF<PGKGPPLWHVVYMRLREGAAPGAARPTPPSAQTPSHLGATLPLGQSVGG |
Parental | DPEVRKQMPPPPPCPAGRELFDDPSYVNVQNLDKARQAVGGAGPPNPAVNGSAPRDLFDMKPFEDALRVP |
DPEV.KQMPPPPPC.A.RELFDDPS.VN.QNLDK..QA.GGAG.PNPA.NGS.P.DLFDMKPFEDAL..P | |
Retrocopy | DPEVCKQMPPPPPCLA-RELFDDPSNVNMQNLDKSWQAGGGAGTPNPAINGSTPWDLFDMKPFEDALHMP |
Parental | PPPQSVSMAEQLRGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGV |
PPPQ.VSMAEQL.G.PWFHGKLS.REAEALLQLNGDFLV.ES.TTPGQYVLTGLQSG.PKHLLLVDPEGV | |
Retrocopy | PPPQLVSMAEQL*GDPWFHGKLS*REAEALLQLNGDFLVQESMTTPGQYVLTGLQSGDPKHLLLVDPEGV |
Parental | VSVAE-VWVRVAERKYSTLQCIRVPS |
V........RV......T...I..PS | |
Retrocopy | VRTKD>TALRVSVTSSATTWTITCPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009236 | 1 retrocopy | |
Homo sapiens | ENSG00000160691 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011515 | 1 retrocopy |
retro_nleu_2362 ,
|
Pongo abelii | ENSPPYG00000000769 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001397 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000011380 | 1 retrocopy |