RetrogeneDB ID:

retro_nleu_2865

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397456.1:1823340..1823729(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM183A
Ensembl ID:ENSNLEG00000013230
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2865
ATGGCAGGACACCCCAGGGAGAAGGTGATCCAGGGTGAGGTCCGTCAGAACCAGATCTTGCAGGAGCTGTACCTCAAAGA
GCTACCAGCCCAGAACGTCTATGCGTGGCATCACGTGAACCCCTCCACGAGGTCCACAGATCACCAGGAAGCCCACGTCT
TGGCATGGTAACCTGGAGGAGCCTGGAGACACCAGGTTTCAGAATCTCATTTGCCACGCTGCCCAGGGACCAAGGAAGAA
GGACCCAGACACAGACTGAAAACCAGGAAACTGCATGGGACTCAGAGCCCTGGCTCAACCCAGAACGCCCAGATCGCAGG
CTCAACCACTGCAGGGTCTGCAGTGACATCGCTCTGTACAAGGCTCAGATGTGGAGCCTGGGAGAAGAT

ORF - retro_nleu_2865 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 66.67 %
Parental protein coverage: 97.76 %
Number of stop codons detected: 0
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalMAGHPRQKVIPDEVHQNQILRELYLKELRTQKLYTQYHVNP-LRKIHT-VTRKPMSWHDNLEEPADARFL
MAGHPR.KVI..EV.QNQIL.ELYLKEL..Q..Y...HVNP.L...H...TRKP.SWH.NLEEP.D.RF.
RetrocopyMAGHPREKVIQGEVRQNQILQELYLKELPAQNVYAWHHVNP<LHEVHR<ITRKPTSWHGNLEEPGDTRFQ
ParentalNLIHHAAQ-GPRKKYP-ETQTENQEVGWDLEPLINPERHDRRLNHFRVCSDITLYKAKTWGLGDD
NLI.HAAQ.G.....P..TQTENQE..WD.EP..NPER.DRRLNH.RVCSDI.LYKA..W.LG.D
RetrocopyNLICHAAQ<GTKEEGP<QTQTENQETAWDSEPWLNPERPDRRLNHCRVCSDIALYKAQMWSLGED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2865 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000053391 retrocopy
Callithrix jacchus ENSCJAG000000033151 retrocopy
Homo sapiens ENSG000001869731 retrocopy
Gorilla gorilla ENSGGOG000000108922 retrocopies
Nomascus leucogenys ENSNLEG00000013230 3 retrocopies
retro_nleu_147, retro_nleu_2537, retro_nleu_2865 ,
Pongo abelii ENSPPYG000000014571 retrocopy
Pan troglodytes ENSPTRG000000006241 retrocopy



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