RetrogeneDB ID:

retro_nleu_420

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397264.1:32074207..32074714(-)
Located in intron of:ENSNLEG00000017729
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SDHC
Ensembl ID:ENSNLEG00000014367
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_420
ATGGCTGCACTCTTGCTGAGACATGTTGGTTGTCATTGCCTCTGAGCCCACTTTAGCCCTCAGCTCTGCACCAGAAATGC
TGTTCCTTTGGGAATCACAGCCGTAAAAGAGATGGAGCGGTTCTGGAATAAGAACACAGGTTCAAACTGTCCCATATCTC
CCCACATCACTATCTACAGTTGGTCTCTCCCCATGGTGATGTCCATCTGCCACCATGGCACTGGTATTGCTTTGAGTGCA
GGGGTCTCTCTTTTTGGCATGTCAGCCCTGTTACTCCCTGGGAACTTTGAGTCTTATTTGGAATGCGTGAAGTCCCTGTG
TCTGGGGCCAGCACTGATCCACACAGCTAAGTTTGCACTCATCTTCCCTCTCATGTATCATGCTTGGAATGGGGTCTGAC
ACTTGATGTGGGACCTAGGAAAAGGCCTGAAGATTGCCCAGCTATACCAGTCTGGAGTGGTTGTCCTGGTTCTTACTGTA
TTGTCCTCTGCAGGTCTGGCAGCCGTG

ORF - retro_nleu_420 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.17 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSIC
MAALLLRHVG.HCL.AHFSPQLC.RNAVPLG.TA..EMERFWNKN.GSN.P.SPHITIYSWSLPM.MSIC
RetrocopyMAALLLRHVGCHCL*AHFSPQLCTRNAVPLGITAVKEMERFWNKNTGSNCPISPHITIYSWSLPMVMSIC
ParentalHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLVWDLG
H.GTGIALSAGVSLFGMSALLLPGNFESYLE.VKSLCLGPALIHTAKFAL.FPLMYH.WNG..HL.WDLG
RetrocopyHHGTGIALSAGVSLFGMSALLLPGNFESYLECVKSLCLGPALIHTAKFALIFPLMYHAWNGV*HLMWDLG
ParentalKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
KGLKI.QLYQSGVVVLVLTVLSS.GLAA.
RetrocopyKGLKIAQLYQSGVVVLVLTVLSSAGLAAV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_420 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000153512 retrocopies
Bos taurus ENSBTAG000000158531 retrocopy
Canis familiaris ENSCAFG000000129922 retrocopies
Callithrix jacchus ENSCJAG000000047573 retrocopies
Echinops telfairi ENSETEG000000157671 retrocopy
Felis catus ENSFCAG000000004991 retrocopy
Homo sapiens ENSG000001432524 retrocopies
Gorilla gorilla ENSGGOG000000080173 retrocopies
Macaca mulatta ENSMMUG0000001241111 retrocopies
Mustela putorius furoENSMPUG000000144391 retrocopy
Nomascus leucogenys ENSNLEG00000014367 3 retrocopies
retro_nleu_1476, retro_nleu_420 , retro_nleu_439,
Pteropus vampyrus ENSPVAG000000055442 retrocopies
Rattus norvegicus ENSRNOG000000031632 retrocopies
Sarcophilus harrisii ENSSHAG000000168351 retrocopy
Sus scrofa ENSSSCG000000303182 retrocopies
Takifugu rubripes ENSTRUG000000018731 retrocopy
Tursiops truncatus ENSTTRG000000092341 retrocopy



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