RetrogeneDB ID: | retro_nleu_420 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397264.1:32074207..32074714(-) | ||
Located in intron of: | ENSNLEG00000017729 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDHC | ||
Ensembl ID: | ENSNLEG00000014367 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSIC |
MAALLLRHVG.HCL.AHFSPQLC.RNAVPLG.TA..EMERFWNKN.GSN.P.SPHITIYSWSLPM.MSIC | |
Retrocopy | MAALLLRHVGCHCL*AHFSPQLCTRNAVPLGITAVKEMERFWNKNTGSNCPISPHITIYSWSLPMVMSIC |
Parental | HRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLVWDLG |
H.GTGIALSAGVSLFGMSALLLPGNFESYLE.VKSLCLGPALIHTAKFAL.FPLMYH.WNG..HL.WDLG | |
Retrocopy | HHGTGIALSAGVSLFGMSALLLPGNFESYLECVKSLCLGPALIHTAKFALIFPLMYHAWNGV*HLMWDLG |
Parental | KGLKIPQLYQSGVVVLVLTVLSSMGLAAM |
KGLKI.QLYQSGVVVLVLTVLSS.GLAA. | |
Retrocopy | KGLKIAQLYQSGVVVLVLTVLSSAGLAAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015351 | 2 retrocopies | |
Bos taurus | ENSBTAG00000015853 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012992 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004757 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000015767 | 1 retrocopy | |
Felis catus | ENSFCAG00000000499 | 1 retrocopy | |
Homo sapiens | ENSG00000143252 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000008017 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000012411 | 11 retrocopies | |
Mustela putorius furo | ENSMPUG00000014439 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014367 | 3 retrocopies |
retro_nleu_1476, retro_nleu_420 , retro_nleu_439,
|
Pteropus vampyrus | ENSPVAG00000005544 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000003163 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016835 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030318 | 2 retrocopies | |
Takifugu rubripes | ENSTRUG00000001873 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009234 | 1 retrocopy |