RetrogeneDB ID: retro_nleu_795

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397273.1:37364801..37365563(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: INA
• Ensembl ID: ENSNLEG00000015236
• Aliases: None
• Description: None

Sequence

>retro_nleu_795
TCACAGGCCGCGGCCGAGGTGGACAAGGCTGTGGCTAAACTAGACCTGACCTCGGCTCTGAGGGAGATCCGCGCCCAGTA
TGAGTCCCTGGCCGCTAAGAACCTGCAGTCCGCGGAAGAATGGTACAAGTCCAAGTTTGCCAACCTGAACGAGCAGGCGG
CGCGCAGCACCGAGGCCATCAGGGCCAGCCGCGAGGAGATCCACGAGTACCGGCGCCAGCTGCAGGCGCGCACCATCGAG
ATCGAGGGCCGGCGCAGAGCCAAGGAGTCCTTGGAGAGGCAGATCCTGGAGCTGGAGGAGCGGCACAGTGCCGAGGTAGC
TGGCTACCAGGATAGCATTGGGCAGCTGGAGAATGATCTGAGGAACACCAAGAGTGAGATAGCACGCCACCTTCGGGAAT
ACCAGGACTTGCTCAATGTCAAAATGGCTCTTGACATTGAGATAGCTGCTTACAAGAAACTGCTGGAAGGCGAGGAGACA
TGTTTTAGCTCCAGTGGGTTAAGCATTTCAGGGCTGAATCCACTTCCCAATCCAAGTTATCTGCTCCCACCTGGAATCCT
CAGTTCTACAACCTCCAAAGTCTCATCCACAGGGCTATCACTTAAGAAAGAGGAGGAGAAGGAGGAGGCATCTAAGGTAG
CCTCTAAGAAAACCTCCCAGATAGGGGAAAGTTTTGAAGAAATATTAGAGGAGACAGTAATATCTACTAAGAAAACCGAG
AAATCAAATATAGAAGAAACCACCATATCAAGCCAAAAAATG

Alignment

ORF - retro_nleu_795 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.28 %
• Parental protein coverage: 50.9 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SQAAAEVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEY
          SQAAAEVD.AVAK.DLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEY
Retrocopy SQAAAEVDKAVAKLDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEY

Parental  RRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIGQLENDLRNTKSEMARHLREYQDLLNV
          RRQLQARTIEIEG.R.A.ESLERQILELEERHSAEVAGYQDSIGQLENDLRNTKSE.ARHLREYQDLLNV
Retrocopy RRQLQARTIEIEGRRRAKESLERQILELEERHSAEVAGYQDSIGQLENDLRNTKSEIARHLREYQDLLNV

Parental  KMALDIEIAAYRKLLEGEETRFSTSGLSISGLNPLPNPSYLLPPRILSSTTSKVSSTGLSLKKEEEEEEA
          KMALDIEIAAY.KLLEGEET.FS.SGLSISGLNPLPNPSYLLPP.ILSSTTSKVSSTGLSLKKEEE.EEA
Retrocopy KMALDIEIAAYKKLLEGEETCFSSSGLSISGLNPLPNPSYLLPPGILSSTTSKVSSTGLSLKKEEEKEEA

Parental  SKVASKKTSQIGESFEEILEETVISTKKTEKSNIEETTISSQKI
          SKVASKKTSQIGESFEEILEETVISTKKTEKSNIEETTISSQK.
Retrocopy SKVASKKTSQIGESFEEILEETVISTKKTEKSNIEETTISSQKM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_795 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000018178	4 retrocopies	retro_cjac_1685, retro_cjac_394, retro_cjac_4043, retro_cjac_760,
Macaca mulatta	ENSMMUG00000008872	1 retrocopy	retro_mmul_936,
Nomascus leucogenys	ENSNLEG00000015236	1 retrocopy	retro_nleu_795 ,