Parental gene: | INA, ENSCJAG00000018178 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 12:90689974..90704207(+) |
>ENSCJAG00000018178
ATGAGCTTCGGCTCGGAGCACTACCTGTGCTCCTCCTCCTCCTCCTACCGCAAGGTGTTCGGGGACGGCTCCCGCCTGTC
CGCGCGCCTCGCCGGGGCCGGCGGCGCTGGCGGCTTCCGCTCGCAGTCCCTGTCCCGCAGCAATGTGGCCTCCTCGACCG
CCTGCTCCTCGGCTTCGTCGCTCGGCCTCGGCCTGGCCTATCGCCGGCCGCCGGCATCCGACGGGCTGGACCTGAGCCAG
GCGGCGGCACGCACCAACGAGTACAAGATCATCCGCACCAACGAGAAGGAGCAGCTGCAGGGACTCAACGACCGCTTCGC
AGTGTTCATCGAGAAGGTTCATCAGCTGGAGACGCAGAACCGCGCGCTGGAGGCCGAGCTGGCTGCGCTGCGGCAGCGCC
ACGCCGAGCCGTCGCGCGTCGGCGAGCTCTTCCAGCGCGAGCTGCGCGACCTGCGCGCGCAGCTGGAGGAGGCGAGCTCG
GCGCGCGCGCAGGCCCTGCTGGAGCGCGACGGGCTGGCCGAGGAGGTGCAGCGGCTGCGGGCGCGCTGCGAGGAGGAGAG
CCGCGGTCGCGAAGGTGCCGAGCGCGCCCTGAAGGCGCAGCAGCGCGACGTGGACGGCGCCACGCTGGCCCGCCTGGACC
TGGAGAAGAAGGTGGAGTCGCTGCTAGACGAGCTGGCCTTCGTGCGCCAGGTGCACGACGAGGAGGTAGCCGAGCTGCTG
GCCACGCTGCAGGCGTCGTCACAGGCCGCGGCCGAGGTGGACGTGGCTGTGGCTAAACCAGACCTGAGCTCGGCGCTGAG
GGAGATCCGCGCCCAATATGAGTCCCTGGCTGCTAAGAACCTGCAGTCCGCGGAGGAATGGTACAAGTCCAAGTTCGCCA
ACCTGAACGAGCAGGCGGCGCGCAGCACCGAGGCCATCCGAGCCAGCCGCGAGGAGATCCACGAGTACCGGCGCCAGCTG
CAGGCGCGCACCATCGAGATCGAGGGCCTGCGCGGGGCCAATGAGTCCTTGGAGAGGCAGATCCTGGAACTGGAGGAGCG
GCACAATGCCGAGGTGGCTGGCTACCAGGATAGCATTGGGCAGCTAGAGAATGATCTGAGGAACACCAAGAGTGAGATGG
CACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCTCTTGACATTGAGATAGCAGCTTACAGGAAACTG
CTGGAAGGCGAAGAGACACGTTTTAGCACCAGTGGGCTAAGCATTTCGGGGCTGAATCCACTTCCCAATCCAAGTTATCT
GCTCCCATCTAGAATCCTCAGTTCAACCTCCAAAGTCTCATCCACTGGGCTATCACTTAAGAAAGAGGAAGAGGAGGAGG
AGGCATCTAAGGTAGCCTCTAAGAAAACCTCCCAGATAGGGGAAAGTTTTGAAGAAATATTAGAGGAGACAGTAATATCT
ACTAAGAAAACCGAGAAATCAAATATAGAAGAAACCACCATTTCGAGCCAAAAAATATAA
ATGAGCTTCGGCTCGGAGCACTACCTGTGCTCCTCCTCCTCCTCCTACCGCAAGGTGTTCGGGGACGGCTCCCGCCTGTC
CGCGCGCCTCGCCGGGGCCGGCGGCGCTGGCGGCTTCCGCTCGCAGTCCCTGTCCCGCAGCAATGTGGCCTCCTCGACCG
CCTGCTCCTCGGCTTCGTCGCTCGGCCTCGGCCTGGCCTATCGCCGGCCGCCGGCATCCGACGGGCTGGACCTGAGCCAG
GCGGCGGCACGCACCAACGAGTACAAGATCATCCGCACCAACGAGAAGGAGCAGCTGCAGGGACTCAACGACCGCTTCGC
AGTGTTCATCGAGAAGGTTCATCAGCTGGAGACGCAGAACCGCGCGCTGGAGGCCGAGCTGGCTGCGCTGCGGCAGCGCC
ACGCCGAGCCGTCGCGCGTCGGCGAGCTCTTCCAGCGCGAGCTGCGCGACCTGCGCGCGCAGCTGGAGGAGGCGAGCTCG
GCGCGCGCGCAGGCCCTGCTGGAGCGCGACGGGCTGGCCGAGGAGGTGCAGCGGCTGCGGGCGCGCTGCGAGGAGGAGAG
CCGCGGTCGCGAAGGTGCCGAGCGCGCCCTGAAGGCGCAGCAGCGCGACGTGGACGGCGCCACGCTGGCCCGCCTGGACC
TGGAGAAGAAGGTGGAGTCGCTGCTAGACGAGCTGGCCTTCGTGCGCCAGGTGCACGACGAGGAGGTAGCCGAGCTGCTG
GCCACGCTGCAGGCGTCGTCACAGGCCGCGGCCGAGGTGGACGTGGCTGTGGCTAAACCAGACCTGAGCTCGGCGCTGAG
GGAGATCCGCGCCCAATATGAGTCCCTGGCTGCTAAGAACCTGCAGTCCGCGGAGGAATGGTACAAGTCCAAGTTCGCCA
ACCTGAACGAGCAGGCGGCGCGCAGCACCGAGGCCATCCGAGCCAGCCGCGAGGAGATCCACGAGTACCGGCGCCAGCTG
CAGGCGCGCACCATCGAGATCGAGGGCCTGCGCGGGGCCAATGAGTCCTTGGAGAGGCAGATCCTGGAACTGGAGGAGCG
GCACAATGCCGAGGTGGCTGGCTACCAGGATAGCATTGGGCAGCTAGAGAATGATCTGAGGAACACCAAGAGTGAGATGG
CACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCTCTTGACATTGAGATAGCAGCTTACAGGAAACTG
CTGGAAGGCGAAGAGACACGTTTTAGCACCAGTGGGCTAAGCATTTCGGGGCTGAATCCACTTCCCAATCCAAGTTATCT
GCTCCCATCTAGAATCCTCAGTTCAACCTCCAAAGTCTCATCCACTGGGCTATCACTTAAGAAAGAGGAAGAGGAGGAGG
AGGCATCTAAGGTAGCCTCTAAGAAAACCTCCCAGATAGGGGAAAGTTTTGAAGAAATATTAGAGGAGACAGTAATATCT
ACTAAGAAAACCGAGAAATCAAATATAGAAGAAACCACCATTTCGAGCCAAAAAATATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 0 .32 RPM |
| SRP051959_skeletal_muscle | 0 .28 RPM |
| SRP051959_lymph_node | 0 .41 RPM |
| SRP051959_lung | 0 .47 RPM |
| SRP051959_liver | 0 .17 RPM |
| SRP051959_kidney | 0 .29 RPM |
| SRP051959_heart | 0 .25 RPM |
| SRP051959_colon | 0 .51 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008688 | other_paralog | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000008872 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015236 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_394 | 79.92 | 52.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_760 | 91.82 | 65.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1685 | 71.79 | 71.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4043 | 87.62 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018178 retrocopies