RetrogeneDB ID: retro_nleu_910

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397276.1:21271812..21272082(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PDRG1
• Ensembl ID: ENSNLEG00000009712
• Aliases: None
• Description: None

Sequence

>retro_nleu_910
GAGTTGGTTGGTGCCATGCTGTCACCTGATGCAGAGTAAGTTCTGTGGTACCTGTTCGAGGTGGAGGAGCATGTTGAGGA
GGTGCTGGCGGACAAGCAGCAGATTGTGGATGTGGACACCAAAAGGAATAAAAACCCAGAGGGCCTGAGAGCCCTGCAGA
ATGGTCTCAGCCTCTCTGAAGATGTGGTTTGCTTCAGGAACATGTTTGTCAAGACGCCTCACCCTCAAGTGAAGGAAATG
ATTAAGCAAAATCAGGATCATCTGGATAAA

Alignment

ORF - retro_nleu_910 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.92 %
• Parental protein coverage: 66.91 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ELVGAMLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMF
          ELVGAMLSP.AE.VL.YL.EVEE..EEVLADK.QIVD.DTKRN.N.EGLRALQ..LSLSEDV.VCF.NMF
Retrocopy ELVGAMLSPDAE*VLWYLFEVEEHVEEVLADKQQIVDVDTKRNKNPEGLRALQNGLSLSEDV-VCFRNMF

Parental  IKMPHPETKEMIEKDQDHLDK
          .K.PHP..KEMI...QDHLDK
Retrocopy VKTPHPQVKEMIKQNQDHLDK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_910 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020766	1 retrocopy	retro_cjac_3320,
Homo sapiens	ENSG00000088356	1 retrocopy	retro_hsap_1037,
Gorilla gorilla	ENSGGOG00000024924	1 retrocopy	retro_ggor_818,
Macropus eugenii	ENSMEUG00000003915	1 retrocopy	retro_meug_1967,
Myotis lucifugus	ENSMLUG00000007377	1 retrocopy	retro_mluc_348,
Macaca mulatta	ENSMMUG00000000973	1 retrocopy	retro_mmul_824,
Nomascus leucogenys	ENSNLEG00000009712	1 retrocopy	retro_nleu_910 ,
Oryctolagus cuniculus	ENSOCUG00000016709	1 retrocopy	retro_ocun_1047,
Ochotona princeps	ENSOPRG00000006403	1 retrocopy	retro_opri_630,
Pongo abelii	ENSPPYG00000010897	1 retrocopy	retro_pabe_869,
Pan troglodytes	ENSPTRG00000013368	1 retrocopy	retro_ptro_707,