>retro_ocun_1169
TCAGAAGCTGTGACCTCCCTGGCTAACCATGATGACAGCTGGGCCCTGTATGCCATCCCAGGCCTGGACTATGTCAGCCA
TGAGGACAGCCTGCCCTACACTTCCAGTGATTAGGTTTACATCCAGCGGGAGCGCTTTGAAAGTTTTCTTCTATACGACC
AGACTAAGCACCTCCTTCTGTGGCTCGGGAGACACTACGGGCCTAGCAAGAGAAGAATCAGCCCTGGCTGGAGCTTTCCA
GTGTCCACCCGGAAACAACTGAGGACATCCGTGTCGCTGTCATCCCCGTCTACACGGGCGTGAGGGAAGCCCAGAATTCC
CATGTCTACTGGTGGGTGTTACCGCATCCGCTTGGAGAACCTTGACAGTGACCTTGGCAGTGACGTCGCGCAGCTCCGGG
TGTGGCACTGGAGGGTATTTAGCCTCTCTGGCACCTTGGGAACAGTGCGAGGCCAAGGCAGGGAACCAGTGTTATCCAGG
GAGGAGCCTGCATCCCAGAACAGCAGCCACGACTCCCTGCAAACGTCTAGTGGGCACACGTGGGGCACATTCCACTTTGA
GAGTCCTGATGGCTGCCACTTTGATGTCCGGAGCCCACCCTTCTCCCTGGAAAGCAATGAAGATGAGAAGACGCCACCCT
CAGGCCTTCACTGGTAGGCCAGCCGAGGCCCTGAGAGCCCGGCTTGGTTCCGAAGA
ORF - retro_ocun_1169 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.11 % |
Parental protein coverage: |
53.35 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | TEAVTFLANHDDSRALYAIPGLDYVSHEDILPYTSTDQVPIQHELFERFLLYDQTK-APPFVARETLRAW |
| .EAVT.LANHDDS.ALYAIPGLDYVSHED.LPYTS.D.V.IQ.E.FE.FLLYDQTK.APP.VARETLRA. |
Retrocopy | SEAVTSLANHDDSWALYAIPGLDYVSHEDSLPYTSSD*VYIQRERFESFLLYDQTK<APPSVARETLRA* |
|
Parental | QEKNHPWLELSDVHRETTENIRVTVIPFYMGMREAQNSHVYWWR-YCIRLENLD----SDVVQLRERHWR |
| QEKN.PWLELS.VH.ETTE.IRV.VIP.Y.G.REAQNSHVYWW..Y.IRLENLD....SDV.QLR..HWR |
Retrocopy | QEKNQPWLELSSVHPETTEDIRVAVIPVYTGVREAQNSHVYWWV>YRIRLENLDSDLGSDVAQLRVWHWR |
|
Parental | IFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLES |
| .FSLSGTL.TVRG....GREPVLS.E.PA.Q.SSH.SLQ.SSGH.WGTF.FE.PDG.HFDVR.PPFSLES |
Retrocopy | VFSLSGTLGTVRGQ---GREPVLSREEPASQNSSHDSLQTSSGHTWGTFHFESPDGCHFDVRSPPFSLES |
|
Parental | NKDEKTPPSGLHWSLGVSNLGPALARR |
| N.DEKTPPSGLHW........PA..RR |
Retrocopy | NEDEKTPPSGLHW*ASRGPESPAWFRR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
61 .92 RPM |
SRP017611_kidney |
0 .00 RPM |
110 .38 RPM |
SRP017611_liver |
0 .00 RPM |
45 .94 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1169 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1169 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1169 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.