>retro_ocun_274
GAAAAGATGAAGGAGATGTTTAAAATCAATCAGTTCAATTTAATGGCAAGTGAGATGATTGCACTCAACAGATCTTTACC
AGATGTTAGGCTAGAAGGGTGTAAAACAAAGGTGTATCCAGATAATCTTCCTACAACAAGTGTGGTGATTGTTTTCCACA
ATGAGGCTTGGAGCACACTTCTACGAACTGTTCATAGTGTCATTAATCGCTCACCAAGACACATGATAGAAGAAATTGTT
CTAGTAGATGATGCCAGTTAAAGAGATTTTGTGAAAAGACCCCTAGAGAGTTATGTGAAAAAATTAAAAGTCCCAGTTCA
TGTAATTCGAATGGAACAACGTTCTGGACTGATCAGAGCTAGGTTAAAAGGAGCTGCTGTGTCAAAAGGCCAAGTGATCA
CCTTTTTGGATGCTCATTGTGAGTGCACAGTGGGGTGGCTGGAGCCTCTCTTAGCCAGGATCAAACATGACAGGAGAACA
GTAGTCTGCCCTATCATTGATGTTATCAGCGATGATACTTTTGAATACATGGCAGGCTCTGATATGACCTATGGTGGGTT
CAACTGGAAGCTCAATTTCCGCTGGTATCCTGTTCCCCAAAGAGAAATGGATAGAAGGAAAGGTGATCGAACTCTTCCTG
TCAGAACACCTACAATGGCAGGAGGCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGCACATATGATGCTGGA
ATGGATATTTGGGGAGGAGAAAGCCTAGAAATTTCCTTTAGGATTTGGCAGTGTGGAGGAACTTTGGAAATTGTTACATG
CTCACATGTTGGACATGTGTTTCAGAAAGCTACACCTTACACGTTTCCAGGAGGCACGGGGCAGATTATCAATAAAAATA
ACAGACGACTTGCAGAAGTGTGGATGGATGAATTCAAGAATTTTTTCTATATAATCTCTCCAGGTGTTACAAAGGTAGAT
TATGGAGATATATCATCGAGACTTGGTCTGAGACACAAGCTACAGTGCAAACCTTTCTCTTGGTACCTAGAGAATATTTA
TCCTGATTCTCAAATTCCATGTCACTATTTCTCATTGGGAGAGATTCGAAATGTAGAAACAAATCAGTGTCTTGATAACA
TGGCCAGAAAAGAGAATGAAAAAGTTGGAATTTTTAATTGTCATGGTATGGGAGGTAATCAGGTTTTCTTGTATACTGCC
AACAAAGAAATTAGAACAGATGACCTTTGCTTGGATGTTTCCAAACTTCATGGCCCAGTCACGATGCTCAAATGCCACCA
CCTAAAAGGCACCCAGCTCTGGGAGTATGACCCAGTGAAGTTAACCTTACGGCATGTGAACAGTAATCAGTGCCTGGACA
AAGCCACCGAAGAGGATAGCCAGGTGCCCAGCATTAGAGACTGCAGTGGAAGCCGGTCACAGCAGTGGCTTCTTCGAAAC
GTCACACTT
ORF - retro_ocun_274 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.92 % |
Parental protein coverage: |
86.87 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EKMKELFKINQFNLMASDLIALNRSLPDVRLEGCKTKVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINR |
| EKMKE.FKINQFNLMAS..IALNRSLPDVRLEGCKTKVYPD.LP.TSVVIVFHNEAWSTLLRTV.SVINR |
Retrocopy | EKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINR |
|
Parental | SPHYLLSEVILVDDASERDFLKLTLENYVKNLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHC |
| SP.....E..LVDDAS.RDF.K..LE.YVK.L.VPV..IRME.RSGLIRARL.GAA.SKGQVITFLDAHC |
Retrocopy | SPRHMIEEIVLVDDAS*RDFVKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDAHC |
|
Parental | ECTLGWLEPLLARIKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDR |
| ECT.GWLEPLLARIK.DR.TVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDR |
Retrocopy | ECTVGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDR |
|
Parental | TLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGHVFRKATPY |
| TLPVRTPTMAGGLFSIDR.YF.EIGTYDAGMDIWGGE.LE.SFRIWQCGG.LEIVTCSHVGHVF.KATPY |
Retrocopy | TLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGESLEISFRIWQCGGTLEIVTCSHVGHVFQKATPY |
|
Parental | TFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRKTLRENLKCKPFSWYLENIYPDS |
| TFPGGTG..INKNNRRLAEVWMDEFK.FFYIISPGV.KVDYGD.S.R..LR..L.CKPFSWYLENIYPDS |
Retrocopy | TFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRHKLQCKPFSWYLENIYPDS |
|
Parental | QIPRRYYSLGEIRNVETNQCLDNMGRKENEKVGIFNCHGMGGNQVFSYTADKEIRTDDLCLDVSRLNGPV |
| QIP..Y.SLGEIRNVETNQCLDNM.RKENEKVGIFNCHGMGGNQVF.YTA.KEIRTDDLCLDVS.L.GPV |
Retrocopy | QIPCHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFLYTANKEIRTDDLCLDVSKLHGPV |
|
Parental | IMLKCHHMRGNQLWEYDAEKLTLRHVNSNQCLDEPSEEDKMVPTMQDCSGSRSQQWLLRNMTL |
| .MLKCHH..G.QLWEYD..KLTLRHVNSNQCLD...EED..VP...DCSGSRSQQWLLRN.TL |
Retrocopy | TMLKCHHLKGTQLWEYDPVKLTLRHVNSNQCLDKATEEDSQVPSIRDCSGSRSQQWLLRNVTL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
3 .20 RPM |
66 .28 RPM |
SRP017611_kidney |
6 .59 RPM |
3 .45 RPM |
SRP017611_liver |
2 .39 RPM |
0 .00 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_274 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_274 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_274 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
8 retrocopies.