RetrogeneDB ID: retro_ogar_19

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873690.1:162986..165692(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000034247
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005643
• Aliases: None
• Description: None

Sequence

>retro_ogar_19
GTGTCACATTTGAAGATGGGCACTGAGAATAAGGAACCAACTGAAAAGTATGAAAATGTGGGAGACACAGAATCTAAGTG
GCTCAAAGTGGAAAGTCTTCACAAGGATCCTGTGCAGGAATCTGAGGTTGGTGAGACAAGTGATAACAGAGTGGAGAATC
AATGGGAAAAGCCTGCAGGAAACAGGATGAAGGATGACAATGGTGGCATCAGGGAAATAGTTGGAAAAGCCAAGAACATG
GCAAACATAAAGACGGAGCAGGGAGATGAGGTGTCTGAGAACAGCTCACAGGTGAGCCCAAAACATGTCACACCCCAGAC
TGTTCTTGCAGAGCAGAAAAGCAGTGAACAAGGCAAATGTGTGGAGAACGTTAATGGAAATTCTCACACTGGTCTGCATG
AGAAAACTGGTGCTGTTAAGAAATCACATAAATGTGATGAGTGTGGGAAATCCTTCAAATATAATTCCCGTCTTGTTCAA
CATAAAATTATGCACACAGGCGAAAAACGCTATGAGTGTGATGACTGTGGAGGGACCTTCCGGAGCAGCTCGAGCCTTCG
GGTCCACAAGCGGATCCATACTGGAGAAAAGCCGTACAAGTGTGAGGAATGTGGGAAAGCATACATGTCCTACTCCAGCC
TTATAAACCATAAAAGCACCCATTCTGGGGAGAAGAACTGTAAGTGTGATGAGTGTGGAAAATCCTTCAATTATAGCTCT
GTTCTGGACCAGCACAAAAGAATCCACACTGGGGAGAAGCCCTATGAATGTGGTGAGTGTGGGAAGGCCTTCCGGAACAG
CTCTGGGCTCAGAGTCCACAAACGGATCCACACAGGGGAGAAACCCTATGAATGTGACATTTGTGGGAAAACCTTCAGTA
ACAGCTCTGGCCTCAGGGTCCATAAACGGATCCATACTGGTGAGAAGCCCTATGAATGTGATGAGTGTGGAAAGGCCTTC
ATTACTTGTAGAACGCTTCTCAATCATAAAAGTATCCACTTTGGAGATAAACCCTATAAATGTGATGAGTGTGAGAAATC
TTTTAACTATAGCTCTCTTCTCATTCAGCACAAAGTCATCCACACTGGAGAGAAACCTTACGAATGTGATGAATGTGGGA
AGGCTTTTAGGAACAGCTCAGGCCTCATAGTCCATAAACGGATTCACACAGGAGAGAAACCTTACAAGTGCGATGTGTGT
GGCAAGGCGTTCAGCTATAGCTCAGGCCTTGCAGTCCATAAAAGCATTCACCCTGGGAAGAAAGCCCATGAATGTAAGGA
GTGTGGGAAATCTTTTAGTTATAACTCACTCCTCCTTCAGCATAGAACTATTCACACTGGAGAGAGACCTTATGTATGTG
ACGTATGTGGGAAAACTTTCAGAAACAATGCAGGCCTCAAAGTTCACCGGAGGCTCCATACTGGGGAAAAACCATACAAG
TGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGCCTTAAAAATCACAAAGGAATCCATCTTGGGGAGAAGCCCTA
TAAATGTAGCTATTGTGAAAAATCCTTTAACTATAGCTCTGCTCTTGAGCAGCATAAAAGAATTCATACAAGGGAAAAAC
CTTTTGGCTGTGATGTGTGTGGAAAAGCTTTCAGAAATAATTCTGGCCTTAAAGTACATAAACGAATCCATACTGGAGAG
AGACCTTACAAATGTGAAGAATGTGGCAAATCCTACATCTCACTCTCAAGCCTTATAAATCATAAAAGTGTACACCCTGG
GGAGAAGCCCTTTAAGTGTGATGAGTGTGAGAAAGCTTTCATTACATACCGAACTCTTATAAACCACAAAAGAGTTCATC
TTGGAGAGAAGCCCTACAAATGTGATGTATGTGAGAAATCTTTTAATTACACCTCACTCCTTTCTCAACACAAAAGGGTC
CACACTAGAGAGAAGCCCTATGAATGTGATAGGTGTGAGAAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCATAAAAG
AATTCATACTGGGGAGAAGCCCTACGAATGTGATGTGTGTGGAAAAGCTTATATCTCGCATTCAAGCCTTATTAACCATA
AAAGTACCCACCCTGGCAAGACACCCTATACGTGTGATGAATGTGGAAAAGCTTTTTTCTCAAGCAGAACTCTTATAAGC
CATAAAAGAGTCCATCTTGGGGAGAAACCTTTCAAGTGTGTCGAATGTGGGAAATCTTTCAGTTACAGCTCTCTCCTTTC
ACAACACAAGAGGATCCACACGGGGGAGAAACCCTATGTATGTGATAGGTGTGGAAAGGCATTCAGGAACAGCTCAGGCC
TCACAGTGCATAAAAGGATCCACACAGGTGAGAAACCCTATGAATGCGATGAGTGTGGGAAGGCATACATCTCACACTCA
AGTCTTATCAACCATAAAAGCGTCCATCGTGGGAAGCAGCCCTATAATTGTGAGTGTGGGAAATCCTTCAATTATAGATC
AGTCTTTGACCAACATAAAAGGATCCACACTGGAAAGAAGCCATACCGATGTAATGAGTGTGGTAAGGCTTTTAATATCA
GATCAAATCTCACCAAGCATAAAAGAACCCATACAGGAGAGGAGTTTGTAAATGTGACAAATGTGGGAAGTCACAGTGGG
ACATCCCAGAGAGCCTGCAAGGGAGGGAGTGCTCTGGATGGGACCAGGATGAGGATGCCTCTGTAG

Alignment

ORF - retro_ogar_19 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.03 %
• Parental protein coverage: 64.99 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ECGKAFNNSSNLSVHKKRIHSGEKPYKCEECGKAFSHSSHLTVHKRIHSGEKPYKCEECGKAFNRYSVLS
          .C....N..S....H.K......K..KC.ECGK.F...S.L..HK..H.GEK.Y.C..CG..F...S.L.
Retrocopy KCVENVNGNSHTGLHEKT-GAVKKSHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDDCGGTFRSSSSLR

Parental  VHKRIHSGEKPYKCEECGKAFNNYSALSTHKRIHSGEKPYKCEECGKSFNMCSTLYIHKRIHSGEKPYKC
          VHKRIH.GEKPYKCEECGKA...YS.L..HK..HSGEK..KC.ECGKSFN..S.L..HKRIH.GEKPY.C
Retrocopy VHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYEC

Parental  EECGKAFNNSSNLSVHKRIHFGEKQYKCEECGKSFNRYSHLSRHKRIHSGEKPYKCEECGKAFNNSSSLS
          .ECGKAF.NSS.L.VHKRIH.GEK.Y.C..CGK.F...S.L..HKRIH.GEKPY.C.ECGKAF.....L.
Retrocopy GECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLL

Parental  VHKRIHSGEKPYKCEECGKAFNRSSHLSRHKRIHSGEKPYKCKECGKSFNNYSNLIVHKRIHSGEKPYKC
          .HK.IH.G.KPYKC.EC.K.FN.SS.L..HK.IH.GEKPY.C.ECGK.F.N.S.LIVHKRIH.GEKPYKC
Retrocopy NHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKC

Parental  EECRKAFRQYSILSAHKRIHSGEKSYKCEECGKAFNDFSSLSVHKRIHSGEKPYKCKECGKSFINYSNLS
          ..C.KAF...S.L..HK.IH.G.K...C.ECGK.F...S.L..H..IH.GE.PY.C..CGK.F.N...L.
Retrocopy DVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDVCGKTFRNNAGLK

Parental  VHQRIHSGEKHYKCEECGKAFNSSSSLSVHKRIHSGEKPYKCLVCGKVFNHYSNLSRHKKIHSREKPYKC
          VH.R.H.GEK.YKC..CGKA..S.SSL..HK.IH.GEKPYKC..C.K.FN..S.L..HK.IH.REKP..C
Retrocopy VHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGC

Parental  EECGKSFNNYSTLSIHQRIHSGEKPYKCQECNKTFKQYSHLSVHQRIHSRQKPYKCDECGKCFYKSSHLS
          ..CGK.F.N.S.L..H.RIH.GE.PYKC.EC.K.....S.L..H...H...KP.KCDEC.K.F.....L.
Retrocopy DVCGKAFRNNSGLKVHKRIHTGERPYKCEECGKSYISLSSLINHKSVHPGEKPFKCDECEKAFITYRTLI

Parental  VHQRIHSGQKPYKCEECGKSFNDYSTLSVHQRIHSGEKPYKCQECNKTFRQYSHLSVHQKIHSGEKPYKC
          .H.R.H.G.KPYKC..C.KSFN..S.LS.H.R.H..EKPY.C..C.K.FR..S.L.VH..IH.GEKPY.C
Retrocopy NHKRVHLGEKPYKCDVCEKSFNYTSLLSQHKRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGEKPYEC

Parental  EECGKAFSQYSHLSVHKRIHSGEKPYKCQECGKSFSDSSNLSVHKRSHSGEKPYKCEECGKSFIQYSHLS
          ..CGKA....S.L..HK..H.G..PY.C.ECGK.F..S..L..HKR.H.GEKP.KC.ECGKSF...S.LS
Retrocopy DVCGKAYISHSSLINHKSTHPGKTPYTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLS

Parental  VHQRIHSGEKKPYKCEECGKSFIQYSHLSVHQRIHSGEKPYKCEECGKAFKHYLTLSVHKRSHSGEKPYK
          .H.RIH.GE.KPY.C..CGK.F...S.L.VH.RIH.GEKPY.C.ECGKA......L..HK..H.G..PY.
Retrocopy QHKRIHTGE-KPYVCDRCGKAFRNSSGLTVHKRIHTGEKPYECDECGKAYISHSSLINHKSVHRGKQPYN

Parental  CGECSKAFSQYSALSVHKRIHSGEKPYKCQECGKSFSKSSYLSVHKRIHSREKLYKCEECG
          C.EC.K.F...S....HKRIH.G.KPY.C.ECGK.F...S.L..HKR.H..E........G
Retrocopy C-ECGKSFNYRSVFDQHKRIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEEFVNVTNVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_19 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000023794	1 retrocopy	retro_ecab_61,
Macaca mulatta	ENSMMUG00000003688	1 retrocopy	retro_mmul_44,
Otolemur garnettii	ENSOGAG00000005643	1 retrocopy	retro_ogar_19 ,
Otolemur garnettii	ENSOGAG00000029638	2 retrocopies	retro_ogar_105, retro_ogar_193,
Pelodiscus sinensis	ENSPSIG00000004688	1 retrocopy	retro_psin_20,
Pelodiscus sinensis	ENSPSIG00000008115	1 retrocopy	retro_psin_11,