RetrogeneDB ID: retro_ogar_1965

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873578.1:2066500..2066872(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPL32
• Ensembl ID: ENSOGAG00000016806
• Aliases: None
• Description: mitochondrial ribosomal protein L32 [Source:HGNC Symbol;Acc:14035]

Sequence

>retro_ogar_1965
ATGACACCAGCCATGCTGGTCTTAGTGGTCCCACCCACTGTGGCCACTGCTGCCTGAGAATTGCTCCAAAACTGTTGGGA
ACAAAGACAGCAGAAGCTTTGGCAAAGCCAGCCAGGCTTTCCCTGTCCCTGTGGAGACCTACCTTAGCAGTCCAAGGTCC
AGTTTTATTTACAGAGCCAGCAAATAATATAAATGAAAGTACAAAGAATTCCAGCCTTTTTGATAGTATTAATATCTTTT
GGATGGCAGCTCACCCCAAACAGATGCACCATTGAAGTTAACCTTTGCAGAAGAAATCCTCAGGAGTTTACTAAAGTTAA
GAACAATACAGACACATGTCCTGAGTGTGATCACCTGAAATAGAAGCATGTA

Alignment

ORF - retro_ogar_1965 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.29 %
• Parental protein coverage: 64.36 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MALAMLVLMVPQGPVTRA--LLRNCWEQLQQKLQQSRPGFPSPS-WGPALAVQGPVLFTEPANDTNGSRE
          M..AMLVL.VP....T.A..LL.NCWEQ.QQKL.QS.PGFP.P..W.P.LAVQGPVLFTEPAN..N.S..
Retrocopy MTPAMLVLVVPPTVATAA*ELLQNCWEQRQQKLWQSQPGFPCPC<WRPTLAVQGPVLFTEPANNINESTK

Parental  NSSLLDS--IFWMAA-PKNRRTIEVNRCRRRNPQKLIKVKNNIDTCPECGHLKQKHV
          NSSL.DS..IFWMAA...NR.TIEVN.C.RRNPQ...KVKNN.DTCPEC.HLK.KHV
Retrocopy NSSLFDSINIFWMAA>TPNRCTIEVNLC-RRNPQEFTKVKNNTDTCPECDHLK*KHV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1965 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000018146	1 retrocopy	retro_mputfur_60,
Mus musculus	ENSMUSG00000015672	1 retrocopy	retro_mmus_61,
Oryctolagus cuniculus	ENSOCUG00000012098	1 retrocopy	retro_ocun_474,
Otolemur garnettii	ENSOGAG00000016806	2 retrocopies	retro_ogar_1965 , retro_ogar_2797,
Rattus norvegicus	ENSRNOG00000015989	1 retrocopy	retro_rnor_460,
Ictidomys tridecemlineatus	ENSSTOG00000013340	1 retrocopy	retro_itri_1122,
Tarsius syrichta	ENSTSYG00000014296	1 retrocopy	retro_tsyr_1710,