RetrogeneDB ID: | retro_ogar_2307 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873610.1:5963391..5963942(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | VHL | ||
| Ensembl ID: | ENSOGAG00000007587 | ||
| Aliases: | None | ||
| Description: | von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:12687] |
| Percent Identity: | 65.62 % |
| Parental protein coverage: | 85.07 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 4 |
| Parental | GHEESGAEESGPEESDPEESGTEEEMD-AGRPRPVLRSVNS-REPSQVIFCNRSPRVVLPVWLNFDGEPQ |
| GHEE.GAEES.PEESD.E.....E....AG...P.L.SVNS...P..VI.CN.SP.VVLP.W..F....Q | |
| Retrocopy | GHEELGAEESSPEESD*EKLDAKELIH>AGQLWPALPSVNS>ANPPKVI-CNFSPCVVLPAW--FNFNSQ |
| Parental | PYPTLQP-GTGRRIHSYRGHLWLFRDAGTYDGLLVNQ-TELFVPSLNVDGQPIFANITLPVTVYTLKERC |
| ..P.L......R.IHSY.GHL.L.RDAGTYD.LLV.Q.T.LFVPSLNVDGQPIF.NITLPV..YTLKE.C | |
| Retrocopy | RQPYLRL>SPARAIHSYQGHLLLLRDAGTYDRLLVKQ<TVLFVPSLNVDGQPIFVNITLPV--YTLKE*C |
| Parental | LQVVRSLVRPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQEHIESQRMGKE |
| L.VV.SLV.PENYRRLD..RSLYEDLEDH.NV.K.LE.LTQEHIESQ....E | |
| Retrocopy | LHVVQSLVKPENYRRLDTFRSLYEDLEDHLNVLKVLEQLTQEHIESQQXXXE |
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gorilla gorilla | ENSGGOG00000010456 | 1 retrocopy | |
| Otolemur garnettii | ENSOGAG00000007587 | 1 retrocopy |
retro_ogar_2307 ,
|
| Pongo abelii | ENSPPYG00000013663 | 1 retrocopy | |
| Ictidomys tridecemlineatus | ENSSTOG00000013959 | 1 retrocopy |