RetrogeneDB ID: retro_ogar_246

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873524.1:1308166..1309213(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000024960
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000011587
• Aliases: None
• Description: None

Sequence

>retro_ogar_246
ATGAAATCCAGAGCACCACAGCTACATTTGGAATACCGATTCTACAAGCAGTTAGGATCTGGAGATGGCATACCTCAAGT
TTACTATTTTGGCCCTTGTGGTAAATACAATGCTATGGTGCTGGAACTGCTGGGACCCAGCTTGGAAGACTTGTTTGACT
TGTGTGACAGGACGTTTTCTCTGAAAACAGTTCTCATGACAGCTATACAACTGATTTCTCGCATGGAATATGTTCATTCA
AAGAACTTGATATACAGAGATGTAAAACCTGAGAACTTCTTAATAGGACGACCGGGAAACAAAACCCAGCAAGTCATTCA
TATTATAGATTTTGGTTTGGCAAAGGAATATATTGATCCAGAGACAAAGAAACACATCCCATACAGAGAACACAAGAGCC
TTACAGGAACAGCTCGATACATGAGCATAAACACACATTTAGGAAAAGAACAAAGTAGAAGAGATGATTTAGAAGCTTTA
GGTCATATGTTTATGTATTTTCTGAGAGGCAGTCTTCCTTGGCAAGGCTTAAAGGCTGACACATTAAAAGAGAGATATCA
GAAAATTGGAGATACAAAACGAGCTACACCCATAGAAGTGTTATGTGAGAATTTTCCAGAAATGGCAACATATCTTCGTT
ATGTCAGAAGGCTAGATTTTTTTGAAAAGCCAGATTATGACTACCTGAGAAAGCTTTTTACAGACTTGTTTGATCGGAAA
GGATATATGTTTGATTATGAATACGACTGGATTGGTAAACAGTTGCCTACTCCAGTGGGTGCGGTTCAGCAAAATCCTGC
TCTGGCATCCAATAGGGAAGCCCATCAACACAGAGATAAAATGCAACAGTCCAAGAACCAGGTTGTAAGTTCTACAAATG
GAGAGTTAAACACAGACGACCCTACTGCAGGACGTTCAAATGCGCCCATCACAGCCCCTACCGAAGTAGAAGTGATGGAT
GAAACCAACTGCCAGAAAGTGTTGAACATGTGGTGCTGCTGTTTTTTCAAACGAAGGAAAAGGAAAACCATCCAGCGCCA
CAAATGA

Alignment

ORF - retro_ogar_246 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.58 %
• Parental protein coverage: 82.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMIAIQ
          MKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLM.AIQ
Retrocopy MKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMTAIQ

Parental  LTEISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTA
          L..ISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTA
Retrocopy L--ISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFGLAKEYIDPETKKHIPYREHKSLTGTA

Parental  RYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFPEE
          RYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFPE.
Retrocopy RYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFPE-

Parental  MATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQDPALASNREAHQH
          MATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQ.PALASNREAHQH
Retrocopy MATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLPTPVGAVQQNPALASNREAHQH

Parental  RDKMQQSKNQVVSSTNGELNTDDPTAGRSNAPITAPTEVEVMDETNCQKVLNMWCCCFFKRRKRKTIQRH
          RDKMQQSKNQVVSSTNGELNTDDPTAGRSNAPITAPTEVEVMDETNCQKVLNMWCCCFFKRRKRKTIQRH
Retrocopy RDKMQQSKNQVVSSTNGELNTDDPTAGRSNAPITAPTEVEVMDETNCQKVLNMWCCCFFKRRKRKTIQRH

Parental  K
          K
Retrocopy K

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_246 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000017550	1 retrocopy	retro_btau_1659,
Callithrix jacchus	ENSCJAG00000017348	2 retrocopies	retro_cjac_2695, retro_cjac_3279,
Macaca mulatta	ENSMMUG00000006646	1 retrocopy	retro_mmul_1040,
Mus musculus	ENSMUSG00000073563	1 retrocopy	retro_mmus_3454,
Otolemur garnettii	ENSOGAG00000003253	2 retrocopies	retro_ogar_1195, retro_ogar_825,
Otolemur garnettii	ENSOGAG00000008746	1 retrocopy	retro_ogar_1351,
Otolemur garnettii	ENSOGAG00000011587	1 retrocopy	retro_ogar_246 ,
Otolemur garnettii	ENSOGAG00000014866	1 retrocopy	retro_ogar_264,
Otolemur garnettii	ENSOGAG00000016063	1 retrocopy	retro_ogar_47,
Otolemur garnettii	ENSOGAG00000016785	1 retrocopy	retro_ogar_2000,
Rattus norvegicus	ENSRNOG00000016677	1 retrocopy	retro_rnor_2189,