RetrogeneDB ID: | retro_ogar_2496 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873629.1:2021505..2022050(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EXOSC1 | ||
Ensembl ID: | ENSOGAG00000016259 | ||
Aliases: | None | ||
Description: | exosome component 1 [Source:HGNC Symbol;Acc:17286] |
Percent Identity: | 79.46 % |
Parental protein coverage: | 93.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAPPVRYCIPGERLCNLEEGSPGSGTYTR-HGYIFSSLAGCLTKTSENGALPVVSVMRETESQLLPDVGA |
MAP..RY.IP..RLCNLEEGS.GS.T.TR.HGYIF.SLAGCLT..SE..ALPVVSVMRETESQLLPDVGA | |
Retrocopy | MAPLMRYYIPSKRLCNLEEGSLGSRTHTR>HGYIFLSLAGCLT*SSESSALPVVSVMRETESQLLPDVGA |
Parental | IVTCKVSSINSRFAKVHILYVGSTPLKNS-FRGTIRKEDVRATEKDKVE-IYKSFRPGDIVLAKVISLGD |
I.TC.VSSINS.FAKVHILYVGSTPLKNS.F.....K.......K.K...IYKSF.PGDIVLA.VISLGD | |
Retrocopy | IITCNVSSINSHFAKVHILYVGSTPLKNS<FEEQSAKMMSKQLKKTKLK<IYKSFHPGDIVLA*VISLGD |
Parental | AQSNYLLTTAENELGVVVAHGESGVQMVPISWCEMQCPKTHIKEF |
AQSNYLLTTA.NELGVVVAH.ESGVQMVPISWCEMQCPKTHIKEF | |
Retrocopy | AQSNYLLTTAKNELGVVVAHSESGVQMVPISWCEMQCPKTHIKEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006477 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007983 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005647 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000002246 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009228 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034321 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011898 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016259 | 1 retrocopy |
retro_ogar_2496 ,
|
Pteropus vampyrus | ENSPVAG00000003372 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048708 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006615 | 1 retrocopy |