RetrogeneDB ID: retro_ogar_2660

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873644.1:1896590..1897523(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005617
• Aliases: None
• Description: None

Sequence

>retro_ogar_2660
AGGAAATTTGTGGGCAGATCTGGTCAAGTGAGCGAGTGGATAATGGACCTTCTTAGGGACAGAGTGAAGCTGGAGAGGCC
TGTGATCTAAATTGACCAGACAGGAGAAAATGTCCTTCCGAAGACCCTAAACCATGAGACCTATGAGGCTAAATATGTGA
TTTGTGCTGTTCCTCCTACTCTGGGAATGAAGATTCACTTCAATCTCCCTCTGCCAATGATGAAGAACCAGCTGATCACT
TGTGTGCCTGTGGGTTCTGTTATCAAGTGTATAGTTTACTACAATGAGCCTTTCTGGAGGAAAAAGGATTACTGTGGAAC
CATGAATATTGAAAGGGAGGAAGCTCCAGTTTCCTACACATTGGATGATACCAAACCTGATGGCACCTATGCTGCAATAA
TGGGATTTATCCTTGCTCACAAAGCCAGAAAGCTGGCATGTCTTACCAAAGAAGAAAGGATGAAGAAACTTTGTGAGCTC
TATGCAAAAGTTCTAGGATCCCAAGAAGCTCTGAAATCACCACATTATGAAGAGAAGAACTGGTGTGAGGAGCAGCAGTA
CTCCAGGGGTTGCTACACCACCTATTTTCCCCCTGGGATCATGACTCAATATGGAAGGGAACTGTGCCAACCAGTGGGCA
GGATTTATTTTGCGGGCACTGAGACTGCCACACACTGGAGTGGCTACATGGAGGGAGCTGTGGAGGCTGGGGAGAGAGCA
GAACAAGAGATTCTGCATGCTGCGGGGAAGATTCCAGAGGATGAAATCTGGCAGCCAGAACCAGAATCGGTGGATGTCCC
TGCGTGACCCATCAATACAACCTTTTTGGAGAGACATCTGCCCTCTGTGCCAGGCCTGCTGAAGCTGATTGGATTGACCA
GCATTTTTTCAGCAGTAGCTCTAGGCTTCCTGGTGCACAAAAAGGGGCTGCTT

Alignment

ORF - retro_ogar_2660 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.32 %
• Parental protein coverage: 61.51 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTGENVLAKTLNHETYEAKYVICAVPPTLGMKIHFSPP
          RKFVG.SGQVSE.IMDLL.DRVKLERPVI.IDQTGENVL.KTLNHETYEAKYVICAVPPTLGMKIHF..P
Retrocopy RKFVGRSGQVSEWIMDLLRDRVKLERPVI*IDQTGENVLPKTLNHETYEAKYVICAVPPTLGMKIHFNLP

Parental  LPMMRNQLITRVPLGSVIKCIVYYNEPFWRKKDYCGTMIIEGEEAPISYTLDDTKPDGTYAAIMGFILAH
          LPMM.NQLIT.VP.GSVIKCIVYYNEPFWRKKDYCGTM.IE.EEAP.SYTLDDTKPDGTYAAIMGFILAH
Retrocopy LPMMKNQLITCVPVGSVIKCIVYYNEPFWRKKDYCGTMNIEREEAPVSYTLDDTKPDGTYAAIMGFILAH

Parental  KARKLARLTKEERMKKLCELYAKVLGSQEALKPSHYEEKNWCEE-QYSGGCYTTYFPPGIMTQYGRVLRQ
          KARKLA.LTKEERMKKLCELYAKVLGSQEALK..HYEEKNWCEE.QYS.GCYTTYFPPGIMTQYGR.L.Q
Retrocopy KARKLACLTKEERMKKLCELYAKVLGSQEALKSPHYEEKNWCEEQQYSRGCYTTYFPPGIMTQYGRELCQ

Parental  PVGRIYFAGTETATHWSGYMEGAVEAGERAAREILHAVGKIPEDEIWQSEPESVDVPARPITTTFLERHL
          PVGRIYFAGTETATHWSGYMEGAVEAGERA..EILHA.GKIPEDEIWQ.EPESVDVPA.PI.TTFLERHL
Retrocopy PVGRIYFAGTETATHWSGYMEGAVEAGERAEQEILHAAGKIPEDEIWQPEPESVDVPA*PINTTFLERHL

Parental  PSVPGLLKLIGLTSIFSAVALGFLAHKKGLL
          PSVPGLLKLIGLTSIFSAVALGFL.HKKGLL
Retrocopy PSVPGLLKLIGLTSIFSAVALGFLVHKKGLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2660 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000005617	4 retrocopies	retro_ogar_2334, retro_ogar_2660 , retro_ogar_318, retro_ogar_421,