RetrogeneDB ID: retro_ogar_318

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:13685869..13686802(+)
• Located in intron of: ENSOGAG00000012261

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005617
• Aliases: None
• Description: None

Sequence

>retro_ogar_318
AGGAAATTTGTGGGTGGATCTGGTTAGATGAGCGAGCGGATAATGGACCTTCTTGGGGACAGAGTGAAGCTGCAGAGGCC
TGTGATCTACATTGACAGACAGGAGAAAATGTCCTTGTGAAGACCCTAAACCATGAGACGTATGAGGCTACATATGTGAT
TTGTGCTGTTCCTCCTACTCTGGGAAGGAAGATTCACTTCAATCCCCTCTGCCAATGAGGAGGAACCAGCTGATCATGCG
TGTGCCTCTGGGTTCTGTTATCAAGTGTATAGTTTACTACAGTGAGCCTTTCTGGAGGAAAAAGGGTTACTATGGAACCA
TGATTACTGAAGAGGAGGAAGCTCCACTTTCCTACGTATCAGATGATACCAAACCTGATGGCAGCTATGCTGCAATAATG
GGATTTATCCTTGCCCACAAAGCCAGAAAGCTGGCACGTCTTACCAAAGAAGAAAGGATGAAGAAACTTTGTGAGCTCTA
TGCAAAAGTTCTAGGATCCCAAGAAGCTCTGAAACCATCACATTATGAAGAGAAGAACTGGTGTGAGGAGCAGCAGTACT
CCAGGGGCTGCTACACCACCTGCTTTCTCCCTGGGATCATGACTCAATGTGGAAGGGTACTGCACCAACCAGTGGGCAGG
ATTGATTTTGCAGGCACTGAGACTGCCACACACTGGAGTGGCTACATGGAGGGAGCTGTGGAGGCTGGGGAGAGAGCAGC
CCGAGAGATCCTGTATGCTGTGGGGAAGATTCCAGAGGATGAAGTCTGGCAGCCAGAAGCAGAATCAGTGGATGTCCCTG
CATGACCCATCACTACAACCTTCTTGGAGAGATATCTGCCTCTGTGCCAGGCCTGCTGAAGCTGATTGGATCGACTGGCA
TCTTTTCAACAGTGGCTCTGGGCTTCCTGGTGCACCCAAAGGGGCTGCTTGTG

Alignment

ORF - retro_ogar_318 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.62 %
• Parental protein coverage: 61.71 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  RKFVGGSGQVSERIMDLLGDRVKLERPVIYID-QTGENVLAKTLNHETYEAKYVICAVPPTLGMKIHFSP
          RKFVGGSG..SERIMDLLGDRVKL.RPVIYID.QTGENVL.KTLNHETYEA.YVICAVPPTLG.KIHF.P
Retrocopy RKFVGGSG*MSERIMDLLGDRVKLQRPVIYID<QTGENVLVKTLNHETYEATYVICAVPPTLGRKIHFNP

Parental  -PLPMMRNQLITRVPLGSVIKCIVYYNEPFWRKKDYCGTMIIEGEEAPISYTLDDTKPDGTYAAIMGFIL
          .PLPM.RNQLI.RVPLGSVIKCIVYY.EPFWRKK.Y.GTMI.E.EEAP.SY..DDTKPDG.YAAIMGFIL
Retrocopy <PLPMRRNQLIMRVPLGSVIKCIVYYSEPFWRKKGYYGTMITEEEEAPLSYVSDDTKPDGSYAAIMGFIL

Parental  AHKARKLARLTKEERMKKLCELYAKVLGSQEALKPSHYEEKNWCEEQ-YSGGCYTTYFPPGIMTQYGRVL
          AHKARKLARLTKEERMKKLCELYAKVLGSQEALKPSHYEEKNWCEEQ.YS.GCYTT.F.PGIMTQ.GRVL
Retrocopy AHKARKLARLTKEERMKKLCELYAKVLGSQEALKPSHYEEKNWCEEQQYSRGCYTTCFLPGIMTQCGRVL

Parental  RQPVGRIYFAGTETATHWSGYMEGAVEAGERAAREILHAVGKIPEDEIWQSEPESVDVPARPITTTFLER
          .QPVGRI.FAGTETATHWSGYMEGAVEAGERAAREIL.AVGKIPEDE.WQ.E.ESVDVPA.PITTTFLER
Retrocopy HQPVGRIDFAGTETATHWSGYMEGAVEAGERAAREILYAVGKIPEDEVWQPEAESVDVPA*PITTTFLER

Parental  HLP-SVPGLLKLIGLTSIFSAVALGFLAHKKGLLV
          .LP.SVPGLLKLIG.T.IFS.VALGFL.H.KGLLV
Retrocopy YLP<SVPGLLKLIGSTGIFSTVALGFLVHPKGLLV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_318 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000005617	4 retrocopies	retro_ogar_2334, retro_ogar_2660, retro_ogar_318 , retro_ogar_421,