RetrogeneDB ID: | retro_ogar_388 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873520.1:35507485..35508356(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000014868 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.47 % |
Parental protein coverage: | 89.81 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MPELAVQKVVVHPLVL-LSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWF |
MPEL.VQKVVVHPLVL.LSVVDHFN.I.KVGNQK.VVGVLLGSWQKKVLDVSNSFAV.FDEDDKD.SVWF | |
Retrocopy | MPELVVQKVVVHPLVL>LSVVDHFN*ISKVGNQKCVVGVLLGSWQKKVLDVSNSFAVLFDEDDKDNSVWF |
Parental | LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI |
LDHDYLENMYGMFKK.NARERIVG.YHTGPKLHKND.A.NELMKRYCPNSVLVIIDVKPKDLGLPTE.YI | |
Retrocopy | LDHDYLENMYGMFKKLNARERIVG*YHTGPKLHKNDVATNELMKRYCPNSVLVIIDVKPKDLGLPTEVYI |
Parental | SVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIR |
SVEEVH.DGTPTS.TFEHV.SEIGAEEAEE.GVEHLL.DIKDTTVG.LSQRITNQVHGLKGLNSKLLDIR | |
Retrocopy | SVEEVHNDGTPTSRTFEHVISEIGAEEAEEAGVEHLL*DIKDTTVGSLSQRITNQVHGLKGLNSKLLDIR |
Parental | SYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNK |
SYLEKVATGKLPINHQII.QLQDVFNLLPD.SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNK | |
Retrocopy | SYLEKVATGKLPINHQII*QLQDVFNLLPDISLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNK |
Parental | IANRDAEKKEGQ |
I.NRDAE.KEGQ | |
Retrocopy | IPNRDAE-KEGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015129 | 2 retrocopies | |
Homo sapiens | ENSG00000103035 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005416 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011125 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005608 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003220 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000014868 | 1 retrocopy |
retro_ogar_388 ,
|
Otolemur garnettii | ENSOGAG00000016843 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000014356 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025918 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008343 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013123 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016950 | 1 retrocopy |