Parental gene:

ENSPPYG00000025918

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:16:57437055..57446204(-)


>ENSPPYG00000025918
ATGCCGGAGCTGGCGGTGCAGAAGGTGGTGGTCCACCCCCTGGTGCTGCTCAGTGTGGTGGATCATTTCAACCGAATCGG
CAAGGTTGGAAACCAGAAGCGTGTTGTTGGTGTGCTTTTGGGGTCATGGCAAAAGAAAGTACTTGATGTATCGAACAGTT
TTGCAGTTCCTTTTGATGAAGATGACAAAGACGATTCTGTGTGGTTTTTAGACCATGATTATTTGGAAAACATGTATGGA
ATGTTTAAGAAAGTCAATGCCAGAGAAAGAATAGTTGGCTGGTACCACACAGGCCCTAAACTACACAAGAATGACATTGC
CATCAACGAACTCATGAAAAGATACTGTCCTAATTCCGTATTGGTCATCATTGATGTGAAGCCGAAGGACCTAGGGCTGC
CCACAGAAGCATACATTTCAGTAGAAGAAGTCCATGATGATGGAACTCCAACCTCGAAAACATTTGAACACGTGACCAGT
GAAATTGGAGCAGAGGAAGCTGAGGAAGTTGGAGTTGAACACTTGTTACGAGACATCAAAGACACGACGGTGGGCACTCT
GTCCCAGCGGATCACAAACCAGGTGCATGGTTTGAAGGGACTGAACTCCAAGCTTCTGGATATCAGGAGCTACCTGGAAA
AAGTCGCCACAGGCAAGCTGCCCATCAACCACCAGATCATCTACCAGCTGCAGGACGTCTTCAACCTGCTGCCAGACGTC
AGCCTGCAGGAGTTTGTCAAGGCCTTTTACCTGAAGACCAACGACCAGATGGTGGTAGTGTACTTGGCCTCGCTGATCCG
TTCCGTGGTCGCCCTGCACAACCTCATCAACAACAAGATTGCCAACCGGGATGCAGAGAAGAAAGAAGGGCAGGAGAAAG
AAGAGAGCAAAAAGGATAGGAAAGAGGACAAGGAGAAAGATAAAGATAAGGAAAAGAGTGATGTAAAGAAAGAGGAGAAA
AAGGAGAAAAAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 14 .26 RPM
SRP007412_cerebellum 8 .51 RPM
SRP007412_heart 9 .24 RPM
SRP007412_kidney 7 .62 RPM
SRP007412_liver 8 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015129 ortholog_one2many 2 retrogenes
retro_cjac_1520, retro_cjac_2910,
Homo sapiens ENSG00000103035 ortholog_one2many 2 retrogenes
retro_hsap_1781, retro_hsap_234,
Gorilla gorilla ENSGGOG00000009774 ortholog_one2many 1 retrogene
retro_ggor_2235,
Myotis lucifugus ENSMLUG00000005416 ortholog_one2many 1 retrogene
retro_mluc_505,
Macaca mulatta ENSMMUG00000011125 ortholog_one2many 4 retrogenes
retro_mmul_1242, retro_mmul_372, retro_mmul_417, retro_mmul_566,
Nomascus leucogenys ENSNLEG00000005608 ortholog_one2many 1 retrogene
retro_nleu_1310,
Otolemur garnettii ENSOGAG00000014868 possible_ortholog 1 retrogene
retro_ogar_388,
Procavia capensis ENSPCAG00000014356 ortholog_one2many 1 retrogene
retro_pcap_399,
Pongo abelii ENSPPYG00000003512 within_species_paralog 1 retrogene
retro_pabe_175,
Pan troglodytes ENSPTRG00000008343 ortholog_one2many 2 retrogenes
retro_ptro_1192, retro_ptro_205,
Ictidomys tridecemlineatus ENSSTOG00000013123 possible_ortholog 1 retrogene
retro_itri_1665,
Tupaia belangeri ENSTBEG00000016950 ortholog_one2many 1 retrogene
retro_tbel_4135,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_418 76.57 87.96
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Download FASTA sequences of all ENSPPYG00000025918 retrocopies