RetrogeneDB ID: retro_ogar_751

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873527.1:6067495..6068883(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000032662
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000001200
• Aliases: None
• Description: None

Sequence

>retro_ogar_751
ATGGGTCGCAAGAAGAAGAAGCAGCTGAAGCCATGGTGCTGGTACTGTAATAGAGATTTTGATGATGAGAAGATCCTTAC
ACAGCACCAAAAAGCAAAGCATTTTAAATGCCATATATGTCACAAGAAATTGTATATAGGACCTGGCTTAGCTATTCATT
GCATGCAGGTACATAAAGAGACAATAGATGCTGTACCAAATGCAATACCTGGGAGAACAAACATAGAGTTGGAAATATAT
GGAATGGAAGGTATTCCAGAAAAAGACATGGATGAAAGAAGACAACTTCTTGAACAGAAGACCCAAGAAAGTAAAAAAAA
GAAGCAACAAGATGATTCTGATGAGTACAATGATGATGATTCTACAAACTCAACTTCATTTCAACCACAGCCTGTTCAAC
CTCAGCAAGGTTATATTCCCCCAATGGCACAGCCAGGACTGCCACCAGTTCTAGGAGCACCAGGAATGCCTCCAGGCATA
CCTCCATTGATGCCTGGTGTTCCTCCTCTGATGCCAGGAATGCCACCAGTTATGCCAGGCATGCCACCTGGATTGCATCA
TCAGAGGAAATACATGCAGTCATTTTGCAGTCAAAACATAATGATGCCAATGGGTGGAATGATGCCCCCTAGACCAGGAT
TACCACCTCTGATGCCTGGGATGTCACCAGGTATGCCTCCCCCTGTTCCGTGTCCTGGAATCCCTCCAGTGACCCAAGCA
CAGGCTGTTTCAGCACCAGGTATTCTTAATAGACCACCTGCACCAACAGCAATAGTACCGGCACCACAGCCTCCTATTAC
TAAGCCTCTTTTTCCTAGTGCTGGACAGGCTCCGTCAGCTGTCCAAGGACTTATTGGTATAGATTTCAAGCCTTTAATTA
GTACCCCTGCAACAACTACAGAACCCCCAAAGCCTCTGTTCCCTGCTTATACACAGTCTACAGCTTCAACCACTGGTACA
ACAAGTAGTACTGCAGCTAAACCAGCAGCTTCAATAACAAGTAAGCATGCTACACTAACGACAACTAGTGCAACCAGTAA
GTTAATCCATCCAGATGACGATATATCACTGGAAGAAAGAAGGGCACAGTTACCCAAATATCAACGTAATCTTCCTCGAC
CAGGACAGGCCCCCATCAATAATCTACCAGTTGGACCAGTTGGAGGTATGATGCCACCACAACCAGGCATCCTACAGCAA
CAAGGAATGAGACCACCAATGCCACCTCATGGTCAGTATGGTTATCATCATCAAGGCATGCCAGGTTACCTTCCTGGTGC
TATGCCACCATATGGGCAGGGAGTGCCAATGGTACCCCCTTACCAAGGTGGGCCTCTCAACCTTCAATAGGAATGAGACC
TCTGGTAATGTCGCAAGGTGGCCACTAC

Alignment

ORF - retro_ogar_751 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.09 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIP
          MGRKKKKQLKPWCWYCNRDFDDEKIL.QHQKAKHFKCHICHKKLY.GPGLAIHCMQVHKETIDAVPNAIP
Retrocopy MGRKKKKQLKPWCWYCNRDFDDEKILTQHQKAKHFKCHICHKKLYIGPGLAIHCMQVHKETIDAVPNAIP

Parental  GRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIP
          GRT.IELEIYGMEGIPEKDMDERR.LLEQKTQES...KQQDDSDEY.DDDS..STSFQPQPVQPQQGYIP
Retrocopy GRTNIELEIYGMEGIPEKDMDERRQLLEQKTQESXXXKQQDDSDEYNDDDSTNSTSFQPQPVQPQQGYIP

Parental  PMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPP
          PMAQPGLPPV.GAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKY.QSFC..NIMMPMGGMMPP
Retrocopy PMAQPGLPPVLGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYMQSFCSQNIMMPMGGMMPP

Parental  GPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQAQAA
          .PG.PPLMPGM.PGMPPPVP.PGIPP.TQAQAVSAPGILNRPPAPTA.VPAPQPP.TKPLFPSAGQA..A
Retrocopy RPGLPPLMPGMSPGMPPPVPCPGIPPVTQAQAVSAPGILNRPPAPTAIVPAPQPPITKPLFPSAGQAPSA

Parental  VPGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIH
          V.G..G.DFKPL.STPATTTEPPKP.FPAYTQSTASTT.TT.STAAKPAASITSK.ATLTTTSATSKLIH
Retrocopy VQGLIGIDFKPLISTPATTTEPPKPLFPAYTQSTASTTGTTSSTAAKPAASITSKHATLTTTSATSKLIH

Parental  PDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGM
          PD.DISLEERRAQLPKYQRNLPRPGQAPI.N.PVGP.GGMMPPQPGI.QQQGMRPPMPPHGQYG.HHQGM
Retrocopy PDDDISLEERRAQLPKYQRNLPRPGQAPINNLPVGPVGGMMPPQPGILQQQGMRPPMPPHGQYGYHHQGM

Parental  PGYLPGAMPPYGQGPPMVPPYQGGP-PRPPMGMRPPVMSQGGRY
          PGYLPGAMPPYGQG.PMVPPYQGGP...P..GMRP.VMSQGG.Y
Retrocopy PGYLPGAMPPYGQGVPMVPPYQGGP<SQPSIGMRPLVMSQGGHY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_751 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001728	1 retrocopy	retro_cpor_1464,
Echinops telfairi	ENSETEG00000003828	1 retrocopy	retro_etel_883,
Homo sapiens	ENSG00000010244	1 retrocopy	retro_hsap_2373,
Myotis lucifugus	ENSMLUG00000016085	1 retrocopy	retro_mluc_322,
Nomascus leucogenys	ENSNLEG00000005954	1 retrocopy	retro_nleu_362,
Otolemur garnettii	ENSOGAG00000001200	2 retrocopies	retro_ogar_33, retro_ogar_751 ,
Pongo abelii	ENSPPYG00000008161	1 retrocopy	retro_pabe_2144,
Pan troglodytes	ENSPTRG00000008989	1 retrocopy	retro_ptro_1735,
Ictidomys tridecemlineatus	ENSSTOG00000000712	2 retrocopies	retro_itri_1800, retro_itri_1875,