RetrogeneDB ID: | retro_cpor_1464 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_89:6438130..6439010(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZNF207 | ||
Ensembl ID: | ENSCPOG00000001728 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.2 % |
Parental protein coverage: | 60.73 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | YTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPP-PVPRPGIPPMTQAQAVSAPGILNRP--PAPTA |
YTQSFC..NIMMPMGGMMP.GPG.PP.MP.MPPGM.P.P..RPGIPPMTQAQAVSAPGILNRP..PAP.A | |
Retrocopy | YTQSFCSTNIMMPMGGMMPRGPGLPPVMPCMPPGMVP<PS*RPGIPPMTQAQAVSAPGILNRPGPPAPIA |
Parental | TVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNS-ESLSASSKALFPSTAQAQAAVQGPVGTDFKPLNST |
TV.APQP..TKPL.P....MGTPVTSS....S......SASSKALFPSTA.AQAAVQG.VGTDFKP.NS. | |
Retrocopy | TVLAPQPLGTKPLLPR--EMGTPVTSS-STASSN>QKVSASSKALFPSTAEAQAAVQGSVGTDFKPINSI |
Parental | PATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPA-ASITSKPATLTTTSATSKLIHPDEDISLEERRAQL |
PA.TTEP.KPTFPAYTQST.S.T.TTNSTA.K.A..S.TSKPATL.T.SA.SKLI.PDED.SLEERRAQL | |
Retrocopy | PAITTEPAKPTFPAYTQSTVSITNTTNSTATKAA<TSVTSKPATLKTSSAISKLIYPDEDTSLEERRAQL |
Parental | PKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPSAMPPYGQ- |
.K.Q.NLP.PGQA.I.NP.V..I.G.M.P....P.QQGMRPPMPP.GQYG.HHQGMPGYLPSAMPP..Q. | |
Retrocopy | SKHQSNLP*PGQASITNPAVVFI-GSMMP----P*QQGMRPPMPPLGQYGSHHQGMPGYLPSAMPPHVQ< |
Parental | GPPMVPPYQGGPPRPPMGMRPPVMSQ |
GPPMVPP.....PR.P.GMR.PV..Q | |
Retrocopy | GPPMVPPNCDRTPRRPVGMRSPVVLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .52 RPM |
SRP017611_kidney | 0 .00 RPM | 71 .29 RPM |
SRP017611_liver | 0 .04 RPM | 40 .87 RPM |
SRP040447_lung | 0 .00 RPM | 94 .53 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 48 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000001728 | 1 retrocopy |
retro_cpor_1464 ,
|
Echinops telfairi | ENSETEG00000003828 | 1 retrocopy | |
Homo sapiens | ENSG00000010244 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016085 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005954 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001200 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008161 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008989 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000712 | 2 retrocopies |