RetrogeneDB ID: retro_ogar_756

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873527.1:11109115..11109614(+)
• Located in intron of: ENSOGAG00000016708

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HEBP1
• Ensembl ID: ENSOGAG00000033976
• Aliases: None
• Description: heme binding protein 1 [Source:HGNC Symbol;Acc:17176]

Sequence

>retro_ogar_756
GGGCAGGAAGAAGTGTCCAGTGAGGAAAAGGCCTGTGAAAGAGGGAAGTGTGCCACGGTGGAAGTGAGAGAAAAGCCTAT
GGATGAGTTTCTGCGGGAAGCAATGCCCAAAGTTGTGAAGTACGTGGTAGGCACCAATGCCAAAGCAATCGGGATGGGGA
TGACAGTCCCTATTTCCTTTGCCATGTTGCCCAATGATGATGGCTTCCTACAGAAGAAGTTAGCAGTCTAGTTCCTGATT
CCAAACCAATGTCAAAGCAACCTGCCAACTCCCTGTGACAAAAGCATCGAGATTGAGGAGTAGGAAGCTATCACTTGTCT
ATTCCATGCAGTTTGGTGGTTATTCCAAGGAAGCAGACTTTGTGTCTCACATAACCCAGCTGTGTTCTGCCCTGGAAGGC
ACAGCTAATGTAACATACCAGAAAAACGTCTACTTCTGCACTGGATGTGACCCTCCCACGAAGCCCTACGGATGGTGCCA
CAGGATCTAGTTGTTGAAG

Alignment

ORF - retro_ogar_756 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.86 %
• Parental protein coverage: 85.86 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GKEEVSYEERACEGGKFATVEVSDKPVDEALREAMPKVVKYVGGTNDKGIGMGMTVPISFAVFPSEDGSL
          G.EEVS.EE.ACE.GK.ATVEV..KP.DE.LREAMPKVVKYV.GTN.K.IGMGMTVPISFA..P..DG.L
Retrocopy GQEEVSSEEKACERGKCATVEVREKPMDEFLREAMPKVVKYVVGTNAKAIGMGMTVPISFAMLPNDDGFL

Parental  QKKLKVWFRIPNEYQSDPPVPSDQSVKIEEREGIT-VYSMQFGGYAKEADYVAHAAQLRAALEGTA--TY
          QKKL.V.F.IPN..QS..P.P.D.S..IEE.E.IT.VYSMQFGGY.KEAD.V.H..QL..ALEGTA..TY
Retrocopy QKKLAV*FLIPNQCQSNLPTPCDKSIEIEE*EAIT>VYSMQFGGYSKEADFVSHITQLCSALEGTANVTY

Parental  QKDIYFCTGYDPPMKPFGRRNEVWLLK
          QK..YFCTG.DPP.KP.G......LLK
Retrocopy QKNVYFCTGCDPPTKPYGWCHRI*LLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_756 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010728	1 retrocopy	retro_amel_1466,
Canis familiaris	ENSCAFG00000013209	1 retrocopy	retro_cfam_1082,
Callithrix jacchus	ENSCJAG00000021628	1 retrocopy	retro_cjac_2023,
Mustela putorius furo	ENSMPUG00000011702	1 retrocopy	retro_mputfur_498,
Otolemur garnettii	ENSOGAG00000005010	1 retrocopy	retro_ogar_2762,
Otolemur garnettii	ENSOGAG00000033976	1 retrocopy	retro_ogar_756 ,
Tarsius syrichta	ENSTSYG00000014555	1 retrocopy	retro_tsyr_2076,